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(-) Description

Title :  GCN4 LEUCINE ZIPPER DOMAIN IN A TRIMERIC OLIGOMERIZATION STATE
 
Authors :  K. M. Oshaben, R. Salari, L. T. Chong, W. S. Horne
Date :  07 Feb 12  (Deposition) - 14 Nov 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Oshaben, R. Salari, D. R. Mccaslin, L. T. Chong, W. S. Horne
The Native Gcn4 Leucine-Zipper Domain Does Not Uniquely Specify A Dimeric Oligomerization State.
Biochemistry V. 51 9581 2012
PubMed-ID: 23116373  |  Reference-DOI: 10.1021/BI301132K

(-) Compounds

Molecule 1 - GCN4-P1 LEUCINE ZIPPER DOMAIN
    Chains: A, B, C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2NH23Mod. Amino AcidAMINO GROUP
3SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREACE A:0 , ARG A:1 , MET A:2 , HOH A:206 , LYS C:28BINDING SITE FOR RESIDUE SO4 A 101
2AC2SOFTWAREARG A:1 , ACE B:0 , MET B:2 , LYS B:3 , NH2 C:34 , HOH C:213BINDING SITE FOR RESIDUE SO4 B 101
3AC3SOFTWAREMET A:2 , ARG A:25 , LYS A:28 , HOH A:215 , ARG B:33 , NH2 B:34 , ACE C:0 , ARG C:1 , MET C:2 , ARG C:33 , HOH C:206BINDING SITE FOR RESIDUE SO4 C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DME)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DME)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DME)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DME)

(-) Exons   (0, 0)

(no "Exon" information available for 4DME)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  4dme A  0 xRMKQLEDKVEELLSKNYHLENEVARLKKLVGERx 34
                            |        9        19        29    |
                            |                                34-NH2
                            0-ACE                              


Chain B from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  4dme B  0 xRMKQLEDKVEELLSKNYHLENEVARLKKLVGERx 34
                            |        9        19        29    |
                            |                                34-NH2
                            0-ACE                              


Chain C from PDB  Type:PROTEIN  Length:35
                                                                  
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  4dme C  0 xRMKQLEDKVEELLSKNYHLENEVARLKKLVGERx 34
                            |        9        19        29    |
                            |                                34-NH2
                            0-ACE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DME)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DME)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DME)

(-) Gene Ontology  (0, 0)

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