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(-) Description

Title :  CRYSTAL STRUCTURE OF MACA-MEXA CHIMERIC PROTEIN, CONTAINING THE PSEUDOMONAS AERUGINOSA MEXA ALPHA-HAIRPIN DOMAIN.
 
Authors :  Y. Xu, N. C. Ha
Date :  03 Feb 12  (Deposition) - 07 Mar 12  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  C,D  (3x)
Keywords :  Alpha-Hairpin, Lipoyl, Beta-Barrel Domains, Periplasmic Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Xu, A. Moeller, S. Y. Jun, M. Le, B. Y. Yoon, J. S. Kim, K. Lee, N. C. Ha
Assembly And Channel Opening Of Outer Membrane Protein In Tripartite Drug Efflux Pumps Of Gram-Negative Bacteria.
J. Biol. Chem. V. 287 11740 2012
PubMed-ID: 22308040  |  Reference-DOI: 10.1074/JBC.M111.329375

(-) Compounds

Molecule 1 - PUTATIVE MACA, MULTIDRUG RESISTANCE PROTEIN MEXA
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 30-88, 95-158, 181-394
    GeneMEXA, PA0425
    Organism ScientificAGGREGATIBACTER ACTINOMYCETEMCOMITANS, PSEUDOMONAS AERUGINOSA
    Organism Taxid714, 208964
    Other DetailsTHE CHIMERIC PROTEIN OF MACA (RESIDUES 30-88), MEXA (RESIDUES 95-158), AND MACA (RESIDUES 181-394)
    StrainPAO1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (3x)AB  
Biological Unit 2 (3x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4DK1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DK1)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Gly A:310 -Val A:311
2Asn A:313 -Asp A:314
3Ser A:321 -Gly A:322
4Gly A:322 -Leu A:323
5Ile A:331 -Ser A:332
6Leu B:85 -Ala B:86
7Gly B:310 -Val B:311
8Asn B:313 -Asp B:314
9Ser B:321 -Gly B:322
10Ile B:331 -Ser B:332
11Leu C:85 -Ala C:86
12Gly C:310 -Val C:311
13Asn C:313 -Asp C:314
14Ser C:321 -Gly C:322
15Ile C:331 -Ser C:332
16Leu D:85 -Ala D:86
17Gly D:310 -Val D:311
18Asn D:313 -Asp D:314
19Ser D:321 -Gly D:322

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DK1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DK1)

(-) Exons   (0, 0)

(no "Exon" information available for 4DK1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:276
 aligned with Q2EHL9_AGGAC | Q2EHL9 from UniProtKB/TrEMBL  Length:394

    Alignment length:344
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    
         Q2EHL9_AGGAC    34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKVTKLYVKLGQQVKKGDLIAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYNRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNVGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSSSNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAVQKQQDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVIS 377
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee..eeee.................ee..........hhhhhhhhhhhhhhhhhhhhhh--------------hhh...........hhhhhhhhhh--------------hhhhhhhhhhhhhhhhhh......eee....................eeee....eeeee....hhhhh.....eeeee........eeee.............-------------------........eee...........eeeeee.................---------------------......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dk1 A  34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQA--------------QRYKLLVADQAVSKQQYADANAAY--------------LQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKmRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISD-------------------SAVYYYANIIVENPEHVLRIGmTTENNIKIADVQNVLFIPNLAVQ---------------------EIGVQNDFQTEVKSGLTEGEKVVIS 332
                                    43        53        63        73        83        93       103       | -         -  |    119       129     |   -         -|      145       155       165       175       185     | 195       205       215       225       235   |     -         -   |   247       257    |  267       277       | -         -       308       318       328    
                                                                                                       111            112                    135            136                                                    191-MSE                                         239                 241                  262-MSE                285                   308                        

Chain B from PDB  Type:PROTEIN  Length:285
 aligned with Q2EHL9_AGGAC | Q2EHL9 from UniProtKB/TrEMBL  Length:394

    Alignment length:344
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373    
         Q2EHL9_AGGAC    34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKVTKLYVKLGQQVKKGDLIAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYNRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNVGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSSSNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAVQKQQDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVIS 377
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee..eeee.................ee..........hhhhhhhhhhhhhhhhhhhhhh--------------hhh...........hhhhhhhhhh--------------hhhhhhhhhhhhhhhhhh......eee....................eeee....eeeee....hhhhh.....eeeee........eeee.............--------------------.......eee...........eeeeee.................--......---------....ee.........ee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dk1 B  34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQA--------------QRYKLLVADQAVSKQQYADANAAY--------------LQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKmRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISD--------------------AVYYYANIIVENPEHVLRIGmTTENNIKIADVQNVLFIPNLAVQ--QDKYVV---------EREIEIGVQNDFQTEVKSGLTEGEKVVIS 332
                                    43        53        63        73        83        93       103       | -         -  |    119       129     |   -         -|      145       155       165       175       185     | 195       205       215       225       235   |     -         -    |  247       257    |  267       277       | -|    |   -     | 308       318       328    
                                                                                                       111            112                    135            136                                                    191-MSE                                         239                  242                 262-MSE                285  |  293       304                            
                                                                                                                                                                                                                                                                                                                                      288                                           

Chain C from PDB  Type:PROTEIN  Length:278
 aligned with Q2EHL9_AGGAC | Q2EHL9 from UniProtKB/TrEMBL  Length:394

    Alignment length:337
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       
         Q2EHL9_AGGAC    41 NIEKNVVATGSIESINTVDVGAQVSGKVTKLYVKLGQQVKKGDLIAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYNRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNVGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSSSNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAVQKQQDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVVIS 377
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee..eeee.................ee..........hhhhhhhhhhhhhhhhhhhhhh--------------hhh...........hhhhhhhhhh--------------hhhhhhhhhhhhhhhhhh......eee....................eeee....eeeee....hhhhh.....eeeee........eeee.............--------------------.......eee...........eeeeee.........ee......--......---------.............ee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dk1 C  41 NIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQA--------------QRYKLLVADQAVSKQQYADANAAY--------------LQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKmRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISD--------------------AVYYYANIIVENPEHVLRIGmTTENNIKIADVQNVLFIPNLAVQ--QDKYVV---------EREIEIGVQNDFQTEVKSGLTEGEKVVIS 332
                                    50        60        70        80        90       100       110|        -     | 116       126        |-         -   |   142       152       162       172       182       192       202       212       222       232      |  -         -       244       254       264       274       284|  |    |-       305       315       325       
                                                                                                111            112                    135            136                                                    191-MSE                                         239                  242                 262-MSE                285  |  293       304                            
                                                                                                                                                                                                                                                                                                                               288                                           

Chain D from PDB  Type:PROTEIN  Length:278
 aligned with Q2EHL9_AGGAC | Q2EHL9 from UniProtKB/TrEMBL  Length:394

    Alignment length:340
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373
         Q2EHL9_AGGAC    34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKVTKLYVKLGQQVKKGDLIAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYNRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNVGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKMRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISDNSSSNSSSSGSSSSSGSSSSAVYYYANIIVENPEHVLRIGMTTENNIKIADVQNVLFIPNLAVQKQQDKYVVNVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEK 373
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeeeee..eeee.................ee..........hhhhhhhhhhhhhhhhhhhhhh--------------hhh...........hhhhhhhhhh--------------hhhhhhhhhhhhhhhhhh......eee....................eeee....eeeee....hhhhh.....eeeee........eeee.............--------------------.......eee...........eeeeee.................--......------------...................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dk1 D  34 TEEVKRGNIEKNVVATGSIESINTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDPATYEADYQSAQANLASTQEQA--------------QRYKLLVADQAVSKQQYADANAAY--------------LQSKAAVEQARINLRYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVADLSKmRIKPEISEGDITKVKAGQDVTFTILSDNKTVYHAKIDSVDPATTTISD--------------------AVYYYANIIVENPEHVLRIGmTTENNIKIADVQNVLFIPNLAVQ--QDKYVV------------IEIGVQNDFQTEVKSGLTEGEK 328
                                    43        53        63        73        83        93       103       | -         -  |    119       129     |   -         -|      145       155       165       175       185     | 195       205       215       225       235   |     -         -    |  247       257    |  267       277       | -|    |   -       308       318       328
                                                                                                       111            112                    135            136                                                    191-MSE                                         239                  242                 262-MSE                285  |  293          307                     
                                                                                                                                                                                                                                                                                                                                      288                                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DK1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DK1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DK1)

(-) Gene Ontology  (9, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q2EHL9_AGGAC | Q2EHL9)
molecular function
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Asn A:313 - Asp A:314   [ RasMol ]  
    Asn B:313 - Asp B:314   [ RasMol ]  
    Asn C:313 - Asp C:314   [ RasMol ]  
    Asn D:313 - Asp D:314   [ RasMol ]  
    Gly A:310 - Val A:311   [ RasMol ]  
    Gly A:322 - Leu A:323   [ RasMol ]  
    Gly B:310 - Val B:311   [ RasMol ]  
    Gly C:310 - Val C:311   [ RasMol ]  
    Gly D:310 - Val D:311   [ RasMol ]  
    Ile A:331 - Ser A:332   [ RasMol ]  
    Ile B:331 - Ser B:332   [ RasMol ]  
    Ile C:331 - Ser C:332   [ RasMol ]  
    Leu B:85 - Ala B:86   [ RasMol ]  
    Leu C:85 - Ala C:86   [ RasMol ]  
    Leu D:85 - Ala D:86   [ RasMol ]  
    Ser A:321 - Gly A:322   [ RasMol ]  
    Ser B:321 - Gly B:322   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEXA_PSEAE | P524771t5e 1vf7 2v4d
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        Q2EHL9_AGGAC | Q2EHL94dk0

(-) Related Entries Specified in the PDB File

4dk0