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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE-LIKE PROTEIN IL0419 (TARGET EFI-501089) FROM IDIOMARINA LOIHIENSIS L2TR
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, W. D. Zencheck, B. Hillerich, R. D. Se E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H R. N. Armstrong, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative
Date :  20 Jan 12  (Deposition) - 01 Feb 12  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Transferase-Like Protein, Transcription Regulation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, W. D. Zencheck, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, R. N. Armstrong, J. A. Gerlt, S. C. Almo
Crystal Structure Of Glutathione S-Transferase-Like Protein Il0419 From Idiomarina Loihiensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE RELATED PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SSPA, IL0419
    Organism Scientific: IDIOMARINA LOIHIENSIS
    Organism Taxid: 283942
    Strain: ATCC BAA-735 / DSM 15497 / L2-TR

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4DEJ)

(-) Sites  (0, 0)

(no "Site" information available for 4DEJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DEJ)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Lys A:60 -Pro A:61
2His A:86 -Pro A:87
3Lys B:60 -Pro B:61
4His B:86 -Pro B:87
5Lys C:60 -Pro C:61
6His C:86 -Pro C:87
7Lys D:60 -Pro D:61
8His D:86 -Pro D:87
9Lys E:60 -Pro E:61
10His E:86 -Pro E:87
11Lys F:60 -Pro F:61
12His F:86 -Pro F:87
13Lys G:60 -Pro G:61
14His G:86 -Pro G:87
15Lys H:60 -Pro H:61
16His H:86 -Pro H:87
17Lys I:60 -Pro I:61
18His I:86 -Pro I:87
19Lys J:60 -Pro J:61
20His J:86 -Pro J:87
21Lys K:60 -Pro K:61
22His K:86 -Pro K:87
23Lys L:60 -Pro L:61
24His L:86 -Pro L:87

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DEJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DEJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4DEJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:202
                                                                                                                                                                                                                                  207 
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206| 
         Q5R0K1_IDILO     7 KRSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4deja1 A:7-88 automated matches                                                  d4deja2 A:89-208 automated matches                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...hhhhhhhhhhhhhhh...eeee......hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej A   7 KRSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206  


Chain B from PDB  Type:PROTEIN  Length:201
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:201
                                                                                                                                                                                                                                 207 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejb1 B:8-88 automated matches                                                 d4dejb2 B:89-208 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...hhhhhhhhhhhhhhh...eeee......hhhhhhhh.......eeee..eee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..................hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej B   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 


Chain C from PDB  Type:PROTEIN  Length:201
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:201
                                                                                                                                                                                                                                 207 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejc1 C:8-88 automated matches                                                 d4dejc2 C:89-208 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej C   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 


Chain D from PDB  Type:PROTEIN  Length:203
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:203
                                                                                                                                                                                                                                   207 
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205 | 
         Q5R0K1_IDILO     6 NKRSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejd1 D:6-88 automated matches                                                   d4dejd2 D:89-208 automated matches                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej D   6 NKRSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205   


Chain E from PDB  Type:PROTEIN  Length:200
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:200
                                                                                                                                                                                                                                207 
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        |-
         Q5R0K1_IDILO     9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4deje1 E:9-88 automated matches                                                d4deje2 E:89-208 automated matches                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej E   9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208


Chain F from PDB  Type:PROTEIN  Length:197
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:197
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       
         Q5R0K1_IDILO     9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELA 205
               SCOP domains d4dejf1 F:9-88 automated matches                                                d4dejf2 F:89-205 automated matches                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eee....eeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej F   9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELA 205
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       


Chain G from PDB  Type:PROTEIN  Length:201
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:201
                                                                                                                                                                                                                                 207 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejg1 G:8-88 automated matches                                                 d4dejg2 G:89-208 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...hhhhhhhhhhhhhhh...eeee......hhhhhh.........eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej G   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 


Chain H from PDB  Type:PROTEIN  Length:201
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:201
                                                                                                                                                                                                                                 207 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejh1 H:8-88 automated matches                                                 d4dejh2 H:89-208 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....hhhhhhhhhhhhhhh...ee........hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej H   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 


Chain I from PDB  Type:PROTEIN  Length:200
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:200
                                                                                                                                                                                                                                207 
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        |-
         Q5R0K1_IDILO     9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4deji1 I:9-88 automated matches                                                d4deji2 I:89-208 automated matches                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej I   9 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208


Chain J from PDB  Type:PROTEIN  Length:202
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:202
                                                                                                                                                                                                                                 207  
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207  
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN--   -
               SCOP domains d4dejj1 J:8-88 automated matches                                                 d4dejj2 J:89-209 automated matches                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej J   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNAE 209
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207  


Chain K from PDB  Type:PROTEIN  Length:201
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:201
                                                                                                                                                                                                                                 207 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN-   -
               SCOP domains d4dejk1 K:8-88 automated matches                                                 d4dejk2 K:89-208 automated matches                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee....hhhhhhhhhhhhhhh...ee........hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej K   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARNA 208
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 


Chain L from PDB  Type:PROTEIN  Length:200
 aligned with Q5R0K1_IDILO | Q5R0K1 from UniProtKB/TrEMBL  Length:207

    Alignment length:200
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
         Q5R0K1_IDILO     8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN 207
               SCOP domains d4dejl1 L:8-88 automated matches                                                 d4dejl2 L:89-207 automated matches                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.......eeee..eeeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dej L   8 RSVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYLDERFPHPPLMPVYPVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYFMSEEFSLVDCYLAPLLWRLPAYGIDLEGQGAKEIKQYMVRLFERKTFQDSLTEEEKELARN 207
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 24)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Fold: GST C-terminal domain-like (353)
(-)
Superfamily: GST C-terminal domain-like (353)
(-)
Family: automated matches (86)
(-)
Protein domain: automated matches (86)
(-)
Idiomarina loihiensis [TaxId: 283942] (1)
1ad4deja2A:89-208
1bd4dejb2B:89-208
1cd4dejk2K:89-208
1dd4dejl2L:89-207
1ed4dejc2C:89-208
1fd4dejd2D:89-208
1gd4deje2E:89-208
1hd4dejf2F:89-205
1id4dejg2G:89-208
1jd4dejh2H:89-208
1kd4deji2I:89-208
1ld4dejj2J:89-209
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: Thioredoxin fold (994)
(-)
Superfamily: Thioredoxin-like (992)
(-)
Family: automated matches (347)
(-)
Protein domain: automated matches (347)
(-)
Idiomarina loihiensis [TaxId: 283942] (1)
2ad4deja1A:7-88
2bd4dejb1B:8-88
2cd4dejk1K:8-88
2dd4dejl1L:8-88
2ed4dejc1C:8-88
2fd4dejd1D:6-88
2gd4deje1E:9-88
2hd4dejf1F:9-88
2id4dejg1G:8-88
2jd4dejh1H:8-88
2kd4deji1I:9-88
2ld4dejj1J:8-88

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DEJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DEJ)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q5R0K1_IDILO | Q5R0K1)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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