4DD8 - JenaLib

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:299 , THR A:300 , VAL A:301 , GLY A:302 , PHE A:303 , HIS A:334 , GLU A:335 , HIS A:338 , HIS A:344 , ALA A:365 , GLY A:366 , SER A:367 , ILE A:368 , ZN A:1002 , CL A:1004	BINDING SITE FOR RESIDUE BAT A 1000
02	AC2	SOFTWARE	GLU A:203 , ASP A:286 , CYS A:395 , ASN A:398 , HOH A:1101 , HOH A:1102	BINDING SITE FOR RESIDUE CA A 1001
03	AC3	SOFTWARE	HIS A:334 , HIS A:338 , HIS A:344 , BAT A:1000	BINDING SITE FOR RESIDUE ZN A 1002
04	AC4	SOFTWARE	ILE A:368 , SER A:371 , HOH A:1103 , HOH A:1104 , HOH A:1105	BINDING SITE FOR RESIDUE NA A 1003
05	AC5	SOFTWARE	ALA A:304 , HIS A:338 , BAT A:1000	BINDING SITE FOR RESIDUE CL A 1004
06	AC6	SOFTWARE	ASP A:295 , PHE A:296 , GLY A:298 , HOH A:1106	BINDING SITE FOR RESIDUE NA A 1005
07	AC7	SOFTWARE	HOH A:1107 , HOH A:1120	BINDING SITE FOR RESIDUE K A 1006
08	AC8	SOFTWARE	ASP A:343 , ASP A:345 , SER A:380 , HOH A:1109	BINDING SITE FOR RESIDUE K A 1007
09	AC9	SOFTWARE	THR B:299 , THR B:300 , VAL B:301 , GLY B:302 , HIS B:334 , GLU B:335 , HIS B:338 , HIS B:344 , ALA B:365 , GLY B:366 , SER B:367 , ILE B:368 , ZN B:1002 , CL B:1004	BINDING SITE FOR RESIDUE BAT B 1000
10	BC1	SOFTWARE	GLU B:203 , ASP B:286 , CYS B:395 , ASN B:398 , HOH B:1101	BINDING SITE FOR RESIDUE CA B 1001
11	BC2	SOFTWARE	HIS B:334 , HIS B:338 , HIS B:344 , BAT B:1000	BINDING SITE FOR RESIDUE ZN B 1002
12	BC3	SOFTWARE	ILE B:368 , SER B:371 , HOH B:1102 , HOH B:1103 , HOH B:1104	BINDING SITE FOR RESIDUE NA B 1003
13	BC4	SOFTWARE	ALA B:304 , GLU B:335 , HIS B:338 , BAT B:1000	BINDING SITE FOR RESIDUE CL B 1004
14	BC5	SOFTWARE	ASP B:295 , PHE B:296 , GLY B:298 , HOH B:1105 , HOH B:1106	BINDING SITE FOR RESIDUE NA B 1005
15	BC6	SOFTWARE	PHE B:258 , THR C:299 , THR C:300 , VAL C:301 , GLY C:302 , HIS C:334 , GLU C:335 , HIS C:338 , HIS C:344 , ALA C:365 , GLY C:366 , SER C:367 , ILE C:368 , ZN C:1002 , CL C:1004 , HOH C:1131	BINDING SITE FOR RESIDUE BAT C 1000
16	BC7	SOFTWARE	GLU C:203 , ASP C:286 , CYS C:395 , ASN C:398 , HOH C:1101	BINDING SITE FOR RESIDUE CA C 1001
17	BC8	SOFTWARE	HIS C:334 , HIS C:338 , HIS C:344 , BAT C:1000	BINDING SITE FOR RESIDUE ZN C 1002
18	BC9	SOFTWARE	ILE C:368 , SER C:371 , HOH C:1102 , HOH C:1103 , HOH C:1104	BINDING SITE FOR RESIDUE NA C 1003
19	CC1	SOFTWARE	ALA C:304 , GLU C:335 , HIS C:338 , BAT C:1000 , HOH C:1185	BINDING SITE FOR RESIDUE CL C 1004
20	CC2	SOFTWARE	ASP C:295 , PHE C:296 , GLY C:298 , HOH C:1105	BINDING SITE FOR RESIDUE NA C 1005
21	CC3	SOFTWARE	GLN A:255 , ASP A:256 , ARG A:257 , HOH A:1125 , THR D:299 , THR D:300 , VAL D:301 , GLY D:302 , HIS D:334 , GLU D:335 , HIS D:338 , HIS D:344 , ALA D:365 , GLY D:366 , SER D:367 , ILE D:368 , ZN D:1002 , CL D:1004	BINDING SITE FOR RESIDUE BAT D 1000
22	CC4	SOFTWARE	GLU D:203 , ASP D:286 , CYS D:395 , ASN D:398 , HOH D:1103 , HOH D:1194	BINDING SITE FOR RESIDUE CA D 1001
23	CC5	SOFTWARE	HIS D:334 , HIS D:338 , HIS D:344 , BAT D:1000	BINDING SITE FOR RESIDUE ZN D 1002
24	CC6	SOFTWARE	ARG D:361 , ILE D:368 , SER D:371 , HOH D:1104 , HOH D:1105 , HOH D:1106	BINDING SITE FOR RESIDUE NA D 1003
25	CC7	SOFTWARE	ALA D:304 , BAT D:1000 , HOH D:1147	BINDING SITE FOR RESIDUE CL D 1004
26	CC8	SOFTWARE	ASP D:295 , PHE D:296 , GLY D:298 , HOH D:1107 , HOH D:1108 , HOH D:1109	BINDING SITE FOR RESIDUE NA D 1005

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:201
 aligned with ADAM8_HUMAN | P78325 from UniProtKB/Swiss-Prot  Length:824

    Alignment length:205
                                   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396     
          ADAM8_HUMAN   197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPD 401
               SCOP domains d4dd8a_ A: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...........hhhhhhhhhhhhhhh----.....eeeeee.........eee..........eeeee....hhhhhhhhhhhhhhhhh...hhhhh............................hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: A:200-400 UniProt: 200-400                                                                                                                                                              - PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dd8 A 197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQAR----RHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPD 401
                                   206       216       226       236       246       256       266       276|    | 286       296       306       316       326       336       346       356       366       376       386       396     
                                                                                                          277  282

Chain B from PDB  Type:PROTEIN  Length:205
 aligned with ADAM8_HUMAN | P78325 from UniProtKB/Swiss-Prot  Length:824

    Alignment length:205
                                   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396     
          ADAM8_HUMAN   197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPD 401
               SCOP domains d4dd8b_ B: automated matches                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...........hhhhhhhhhhhhhhhhh.......eeeeee.........eee..........eeeee....hhhhhhhhhhhhhhhhh...hhhhh............................hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: B:200-400 UniProt: 200-400                                                                                                                                                              - PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dd8 B 197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPD 401
                                   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396

Chain C from PDB  Type:PROTEIN  Length:201
 aligned with ADAM8_HUMAN | P78325 from UniProtKB/Swiss-Prot  Length:824

    Alignment length:204
                                   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396    
          ADAM8_HUMAN   197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAP 400
               SCOP domains d4dd8c_ C: automated matches                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee...........hhhhhhhhhhhhhhh..---....eeeeee.........eee..........eeeee....hhhhhhhhhhhhhhhhh...hhhhh............................hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---ADAM_MEPRO  PDB: C:200-400 UniProt: 200-400                                                                                                                                                               PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dd8 C 197 RETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQR---HLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAP 400
                                   206       216       226       236       246       256       266       276  |   |286       296       306       316       326       336       346       356       366       376       386       396    
                                                                                                            279 283

Chain D from PDB  Type:PROTEIN  Length:208
 aligned with ADAM8_HUMAN | P78325 from UniProtKB/Swiss-Prot  Length:824

    Alignment length:208
                                   205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395        
          ADAM8_HUMAN   196 SRETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPDLS 403
               SCOP domains d4dd8d_ D: automated matches                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...........hhhhhhhhhhhhhhhhh.......eeeeee.........eee..........eeeee.....hhhhhhhhhhhhhhhh...hhhhh............................hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ADAM_MEPRO  PDB: D:200-400 UniProt: 200-400                                                                                                                                                              --- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE--------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dd8 D 196 SRETRYVELYVVVDNAEFQMLGSEAAVRHRVLEVVNHVDKLYQKLNFRVVLVGLEIWNSQDRFHVSPDPSVTLENLLTWQARQRTRRHLHDNVQLITGVDFTGTTVGFARVSAMCSHSSGAVNQDHSKNPVGVACTMAHEMGHNLGMDHDENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPDLS 403
                                   205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (53, 53)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ADAM8_HUMAN | P78325)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0050839	cell adhesion molecule binding	Interacting selectively and non-covalently with a cell adhesion molecule.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004222	metalloendopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008237	metallopeptidase activity	Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043621	protein self-association	Interacting selectively and non-covalently with a domain within the same polypeptide.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0035419	activation of MAPK activity involved in innate immune response	Any process that initiates the activity of the inactive enzyme MAP kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0001525	angiogenesis	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
	GO:0000902	cell morphogenesis	The developmental process in which the size or shape of a cell is generated and organized.
	GO:0071456	cellular response to hypoxia	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
	GO:0022617	extracellular matrix disassembly	A process that results in the breakdown of the extracellular matrix.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0002523	leukocyte migration involved in inflammatory response	The movement of a leukocyte within or between different tissues and organs of the body contributing to an inflammatory response.
	GO:0048247	lymphocyte chemotaxis	The directed movement of a lymphocyte in response to an external stimulus.
	GO:0043524	negative regulation of neuron apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
	GO:0051092	positive regulation of NF-kappaB transcription factor activity	Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
	GO:0033089	positive regulation of T cell differentiation in thymus	Any process that activates or increases the frequency, rate or extent of T cell differentiation in the thymus.
	GO:2000406	positive regulation of T cell migration	Any process that activates or increases the frequency, rate or extent of T cell migration.
	GO:0002675	positive regulation of acute inflammatory response	Any process that activates or increases the frequency, rate, or extent of an acute inflammatory response.
	GO:0045780	positive regulation of bone resorption	Any process that activates or increases the frequency, rate or extent of bone resorption.
	GO:0045785	positive regulation of cell adhesion	Any process that activates or increases the frequency, rate or extent of cell adhesion.
	GO:0002693	positive regulation of cellular extravasation	Any process that activates or increases the frequency, rate, or extent of cellular extravasation.
	GO:2000418	positive regulation of eosinophil migration	Any process that activates or increases the frequency, rate or extent of eosinophil migration.
	GO:2000415	positive regulation of fibronectin-dependent thymocyte migration	Any process that activates or increases the frequency, rate or extent of fibronectin-dependent thymocyte migration.
	GO:0050729	positive regulation of inflammatory response	Any process that activates or increases the frequency, rate or extent of the inflammatory response.
	GO:0051044	positive regulation of membrane protein ectodomain proteolysis	Any process that activates or increases the frequency, rate or extent of membrane protein ectodomain peptidolysis.
	GO:2000391	positive regulation of neutrophil extravasation	Any process that activates or increases the frequency, rate or extent of neutrophil extravasation.
	GO:0051897	positive regulation of protein kinase B signaling	Any process that activates or increases the frequency, rate or extent of protein kinase B signaling, a series of reactions mediated by the intracellular serine/threonine kinase protein kinase B.
	GO:0010954	positive regulation of protein processing	Any process that increases the rate, frequency or extent of protein maturation by peptide bond cleavage.
	GO:0050714	positive regulation of protein secretion	Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell.
	GO:0070245	positive regulation of thymocyte apoptotic process	Any process that activates or increases the frequency, rate or extent of thymocyte death by apoptotic process.
	GO:2000309	positive regulation of tumor necrosis factor (ligand) superfamily member 11 production	Any process that activates or increases the frequency, rate or extent of tumor necrosis factor (ligand) superfamily member 11 production.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0022407	regulation of cell-cell adhesion	Any process that modulates the frequency, rate or extent of attachment of a cell to another cell.
	GO:0016337	single organismal cell-cell adhesion	The attachment of one cell to another cell via adhesion molecules, where both cells are part of the same organism.
cellular component
	GO:0071133	alpha9-beta1 integrin-ADAM8 complex	A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM8.
	GO:0071065	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex	A protein complex that consists of an alpha9-beta1 integrin complex bound to vascular cell adhesion molecule-1.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0032127	dense core granule membrane	The lipid bilayer surrounding a dense core granule.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0032010	phagolysosome	A membrane-bounded intracellular vesicle formed by maturation of an early phagosome following the ingestion of particulate material by phagocytosis; during maturation, phagosomes acquire markers of late endosomes and lysosomes.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0002102	podosome	An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm.
	GO:0042581	specific granule	Granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase.
	GO:0070820	tertiary granule	A secretory granule that contains cathepsin and gelatinase and is readily exocytosed upon cell activation; found primarily in mature neutrophil cells.

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	Cis Peptide Bonds
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 26)

Sites (26, 26)

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (53, 53)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File