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(-) Description

Title :  CRYSTAL STRUCTURE OF B. SUBTILIS ENGA IN COMPLEX WITH GDP
 
Authors :  J. -B. Reiser, D. Housset, A. -E. Foucher, J. -M. Jault
Date :  18 Jan 12  (Deposition) - 14 Nov 12  (Release) - 14 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Gtpase, Enga, Gdp, Protein Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. E. Foucher, J. B. Reiser, C. Ebel, D. Housset, J. M. Jault
Potassium Acts As A Gtpase-Activating Element On Each Nucleotide-Binding Domain Of The Essential Bacillus Subtili Enga.
Plos One V. 7 46795 2012
PubMed-ID: 23056455  |  Reference-DOI: 10.1371/JOURNAL.PONE.0046795

(-) Compounds

Molecule 1 - GTP-BINDING PROTEIN ENGA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: DER, ENGA, YPHC, BSU22840
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: GTP-BINDING PROTEIN YPHC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:185 , VAL A:186 , GLY A:187 , LYS A:188 , SER A:189 , SER A:190 , LYS A:236 , ASN A:294 , LYS A:295 , ASP A:297 , SER A:329 , ALA A:330 , LEU A:331 , HOH A:725BINDING SITE FOR RESIDUE GDP A 501
2AC2SOFTWAREASN A:13 , VAL A:14 , GLY A:15 , LYS A:16 , SER A:17 , THR A:18 , ARG A:93 , ASN A:119 , LYS A:120 , SER A:145 , GLY A:146 , THR A:147 , HOH A:829BINDING SITE FOR RESIDUE GDP A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DCU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:131 -Asp A:132
2Lys A:391 -Pro A:392

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DCU)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_ENGAPS51712 EngA-type guanine nucleotide-binding (G) domain profile.DER_BACSU4-167
176-351		  2A:4-167
A:176-351

(-) Exons   (0, 0)

(no "Exon" information available for 4DCU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:400
 aligned with DER_BACSU | P50743 from UniProtKB/Swiss-Prot  Length:436

    Alignment length:432
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432  
            DER_BACSU     3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 434
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhheeeee.-----------.eeee........eee....------.hhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh.....eeeeee..---------..hhhhh...eee.......hhhhhhhhhhhhhhhh.........eeeeee.....hhhhhhhhhhh...eee..------....eeeee..eeeee.hhhhh..........hhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhh..eeeeeeehhhhh....hhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...ee..ee..eeeeeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -G_ENGA  PDB: A:4-167 UniProt: 4-167                                                                                                                                 --------G_ENGA  PDB: A:176-351 UniProt: 176-351                                                                                                                                         ----------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dcu A   3 KPVVAIVGRPNVGKSTIFNRIAGERIS-----------RIYSSAEWLNYDFNLIDTGG------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL---------YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN------DAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARA 434
                                    12        22      |  -        42        52       | -    |   72        82        92       102       112        |-       132       142       152       162       172       182       192       202  |    212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432  
                                                     29          41                 60     67                                                   121       131                                                                       205    212
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DCU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DCU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DCU)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (DER_BACSU | P50743)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0042254    ribosome biogenesis    A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DER_BACSU | P50743: 2hjg 4dcs 4dct 4dcv 4kyu 5x4b

(-) Related Entries Specified in the PDB File

2hjg 4dcs 4dct 4dcv