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(-) Description

Title :  CRYSTAL STRUCTURE OF SMALL SINGLE-STRANDED DNA-BINDING PROTEIN FROM STREPTOMYCES COELICOLOR
 
Authors :  Z. Filic, P. Herron, N. Ivic, M. Luic, B. A. Manjasetty, T. Paradzik, D. V
Date :  13 Jan 12  (Deposition) - 16 Jan 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Keywords :  Ob-Fold, Dna-Binding, Single-Stranded Dna, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Paradzik, N. Ivic, Z. Filic, B. A. Manjasetty, P. Herron, M. Luic, D. Vujaklija
Structure-Function Relationships Of Two Paralogous Single-Stranded Dna-Binding Proteins From Streptomyces Coelicolor: Implication Of Ssbb In Chromosome Segregation During Sporulation.
Nucleic Acids Res. V. 41 3659 2013
PubMed-ID: 23393191  |  Reference-DOI: 10.1093/NAR/GKT050

(-) Compounds

Molecule 1 - SINGLE-STRANDED DNA-BINDING PROTEIN 1
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-30
    Expression System Strain: NM522
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-116
    Gene: SCC61A.04C, SCO2683, SSB1
    Mutation: YES
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Strain: M145
    Synonym: SSB 1, HELIX-DESTABILIZING PROTEIN 1

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCD        
Biological Unit 2 (1x):     EFGH    
Biological Unit 3 (1x):         IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4DAM)

(-) Sites  (0, 0)

(no "Site" information available for 4DAM)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:7 -B:7
2C:7 -D:7
3E:7 -F:7
4G:7 -H:7
5I:7 -J:7
6K:7 -L:7

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DAM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DAM)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SSBPS50935 Single-strand binding (SSB) domain profile.SSB1_STRCO1-107
 
 
 
 
 
 
 
 
 
 
 		  12A:1-107
B:1-107
C:1-107
D:1-107
E:1-107
F:1-107
G:1-107
H:1-107
I:1-107
J:1-107
K:1-107
L:1-107
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SSBPS50935 Single-strand binding (SSB) domain profile.SSB1_STRCO1-107
 
 
 
 
 
 
 
 
 
 
 		  4A:1-107
B:1-107
C:1-107
D:1-107
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SSBPS50935 Single-strand binding (SSB) domain profile.SSB1_STRCO1-107
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
E:1-107
F:1-107
G:1-107
H:1-107
-
-
-
-
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SSBPS50935 Single-strand binding (SSB) domain profile.SSB1_STRCO1-107
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
I:1-107
J:1-107
K:1-107
L:1-107

(-) Exons   (0, 0)

(no "Exon" information available for 4DAM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:113
                             1                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109   
           SSB1_STRCO     - -MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGTA 112
               SCOP domains d4dama_ A: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....eeeee..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeeeeeee..eeeeeeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SSB  PDB: A:1-107 UniProt: 1-107                                                                           ----- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4dam A   0 SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGTA 112
                                     9        19        29        39        49        59        69        79        89        99       109   


Chain B from PDB  Type:PROTEIN  Length:108
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4damb_ B: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeee.--...eeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeeeeeee..eeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: B:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4dam B   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWD--KNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
                                    10        20        30        |- |      50        60        70        80        90       100       110
                                                                 39 42                                                                    


Chain C from PDB  Type:PROTEIN  Length:100
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:112
                             1                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109  
           SSB1_STRCO     - -MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGT 111
               SCOP domains d4damc_ C: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....eeeee..eeeeeeeeeeeeee..----..eeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee--------..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SSB  PDB: C:1-107 UniProt: 1-107                                                                           ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4dam C   0 SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWD----AWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVR--------RTSADIDAVAIGHDLARGT 111
                                     9        19        29        39    |   49        59        69        79    |    -   |    99       109  
                                                                  39   44                                      84       93                  


Chain D from PDB  Type:PROTEIN  Length:109
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLAR 109
               SCOP domains d4damd_ D: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeee......eeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee..........eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: D:1-107 UniProt: 1-107                                                                           -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4dam D   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLAR 109
                                    10        20        30        40        50        60        70        80        90       100         


Chain E from PDB  Type:PROTEIN  Length:112
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:112
                             1                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109  
           SSB1_STRCO     - -MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGT 111
               SCOP domains d4dame_ E: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....eeeee..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee..........eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SSB  PDB: E:1-107 UniProt: 1-107                                                                           ---- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4dam E   0 SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGT 111
                                     9        19        29        39        49        59        69        79        89        99       109  


Chain F from PDB  Type:PROTEIN  Length:110
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4damf_ F: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeeeeeee..eeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: F:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4dam F   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain G from PDB  Type:PROTEIN  Length:98
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:111
                             1                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109 
           SSB1_STRCO     - -MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4damg_ G: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....eeeee..eeeeeeeeeeeeee.------.eeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee.-------..eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SSB  PDB: G:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 4dam G   0 SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYW------WTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRT-------RTSADIDAVAIGHDLARG 110
                                     9        19        29        |-     |  49        59        69        79     |   -   |    99       109 
                                                                 38     45                                      85      93                 


Chain H from PDB  Type:PROTEIN  Length:108
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4damh_ H: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeee...--.eeeeeeeeeeeeeehhhhhhhhh......eeeeeeeeeeeeeee..eeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: H:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4dam H   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDRE--AWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
                                    10        20        30        40|  |    50        60        70        80        90       100       110
                                                                   41 44                                                                  


Chain I from PDB  Type:PROTEIN  Length:110
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4dami_ I: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeeeeeee..eeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: I:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4dam I   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain J from PDB  Type:PROTEIN  Length:108
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:112
                                    10        20        30        40        50        60        70        80        90       100       110  
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGTA 112
               SCOP domains d4damj_ J: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeee.----...eeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee..........eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: J:1-107 UniProt: 1-107                                                                           ----- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 4dam J   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYW----NAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARGTA 112
                                    10        20        30       | -  |     50        60        70        80        90       100       110  
                                                                38   43                                                                     


Chain K from PDB  Type:PROTEIN  Length:111
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:111
                             1                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109 
           SSB1_STRCO     - -MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4damk_ K: automated matches                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....eeeee..eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeeeeeee..eeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -SSB  PDB: K:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 4dam K   0 SMNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
                                     9        19        29        39        49        59        69        79        89        99       109 


Chain L from PDB  Type:PROTEIN  Length:100
 aligned with SSB1_STRCO | Q9KYI9 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           SSB1_STRCO     1 MNETMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIGHDLARG 110
               SCOP domains d4daml_ L: automated matches                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee....eeeee..eeeeeeeeeeeeeee.---..eeeeeeeeeeeeeehhhhhhhhhhh....eeeeeeeeeee.-------..eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SSB  PDB: L:1-107 UniProt: 1-107                                                                           --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 4dam L   1 MNEIMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWD---NAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKVRT-------RTSADIDAVAIGHDLARG 110
                                    10        20        30        |-  |     50        60        70        80    |    -  |    100       110
                                                                 39  43                                        85      93
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DAM)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (SSB1_STRCO | Q9KYI9)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003697    single-stranded DNA binding    Interacting selectively and non-covalently with single-stranded DNA.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

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  4dam
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  SSB1_STRCO | Q9KYI9
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3eiv LARGE SINGLE-STRANDED DNA-BINDING PROTEIN FROM STREPTOMYCES COELICOLOR