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(-) Description

Title :  CRYSTAL STRUCTURE OF TEP1R
 
Authors :  B. V. Le, M. Williams, S. Logarajah, R. H. G. Baxter
Date :  11 Jan 12  (Deposition) - 17 Oct 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Plasmodium Refractory Allele, Immune System, Full-Length Protein, Thioester, Macroglobulin Domains, Component Of Innate Immune Response By The Opsinization And Melanization Of Pathogens (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. V. Le, M. Williams, S. Logarajah, R. H. Baxter
Molecular Basis For Genetic Resistance Of Anopheles Gambiae To Plasmodium: Structural Analysis Of Tep1 Susceptible And Resistant Alleles.
Plos Pathog. V. 8 02958 2012
PubMed-ID: 23055931  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1002958

(-) Compounds

Molecule 1 - THIOESTER-CONTAINING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HIGH FIVE
    Expression System Plasmid: PFASTBACI
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 22-1338
    Gene: TEP1
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165
    Strain: L3-5

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2NA2Ligand/IonSODIUM ION
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:199 , SER A:201 , GLU A:208BINDING SITE FOR RESIDUE NAG A 2001
2AC2SOFTWAREHIS A:238 , ASN A:242 , GLU A:285BINDING SITE FOR RESIDUE NAG A 2002
3AC3SOFTWARETYR A:310 , ASN A:312 , SER A:1208BINDING SITE FOR RESIDUE NAG A 2003
4AC4SOFTWAREASN A:637 , VAL A:638 , NAG A:2005 , HOH A:2230BINDING SITE FOR RESIDUE NAG A 2004
5AC5SOFTWARENAG A:2004BINDING SITE FOR RESIDUE NAG A 2005
6AC6SOFTWAREASN A:1065BINDING SITE FOR RESIDUE NAG A 2006
7AC7SOFTWARESER A:921 , VAL A:922 , PHE A:923 , LYS A:966 , ALA A:967 , GLN A:976BINDING SITE FOR RESIDUE CL A 2007
8AC8SOFTWARELYS A:1059 , GLU A:1061BINDING SITE FOR RESIDUE NA A 2008
9AC9SOFTWARELEU A:1296 , LYS A:1297 , LYS A:1322 , GLN A:1323BINDING SITE FOR RESIDUE NA A 2009

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:1217 -A:1283
2A:1326 -A:1338
3A:1329 -A:1334

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile A:487 -Pro A:488

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D94)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D94)

(-) Exons   (0, 0)

(no "Exon" information available for 4D94)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1274
 aligned with C9XI66_ANOGA | C9XI66 from UniProtKB/TrEMBL  Length:1338

    Alignment length:1318
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             1338 
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      | 
        C9XI66_ANOGA     22 LLVVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLEGETDNGLSVLNVTKMVDVRRNMNRMINFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEGEELVSKTFEVKEYVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLKLKKELTVYGKGQVELRFDNFAMDADQQDVPVKVSFVEQYTNRTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEVSDVRFETTTTSDNDGLIKLELQPSEGTEQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMRPNKQPKYLLQLNATEKMIPRAKILIATVAGRTVVYDFADLDFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFHAINENEFDIFHSLGLFARTLDDILFDSANEKTGRNALQSGKPIGKLVSYRTNFQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTTVQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDTRFFCFDDHKNQTFPINLDINKKADSGSTKIEFRLNPNLLTTVIKNLDHLLGVPTGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRNDYTVQLKYKKSAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFENRFQLDLEKQNTGSDYELRLKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNPISEQTKVNPIQKTEIRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQNLCEICDEEDCPAEC-    -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.ee.....eeeeeee......eeeeeeee.------........eeeee..eeeeeee..........eeeeeee......eeeeeeee.....eeeeee...ee....eeeeeeeee...........eeeeeee.....eeeeeeeee....eeeeeee.......eeeeeeee....eeeeeeeee.......eeeeeee....hhhh.eeeeeeeeee......eeeeeeeeeehhhheeeeeeeeee.eeeeeee.........eeeeeeeeeeee.....eeeeeeeeeee...eeeeeee..........eeeeeeeee.........eeeeee.hhheeeeee.....eeeeee.......eeeeeee.....eeeeeee..hhhhhh.eeeee........eeeeeeeeeeee..eeeeeee..eeeeeeee....eeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeee.hhhh...eeee.........eeeeeee.....eeeeeeeehhhhhhh....hhhhhhhhhhh...----...hhhhhhheeeee....ee..--------------------------.......eee.....eeeeeee.....eeeeeeeeeee...eeee....eeeee...eeeeee...eee...eeeeeeeeee.....eeeeeeee.hhh.eee........eeeeeeee.....eeeeeeeee...eeeeeeeeee......eeeeeeeeeee.......eeeeeeeeeeeeeeeeeeee..--------..eeeeeee...hhhhhhh............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..............hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.eee....eee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh....eeeeeeee...eeeeee..........ee......eeeeeeeeeeeeeeeeeee.......eee.eeeeeeee......eeeeeeeeee...........eeeeee....eeeeeeeee.........eeeee....eeeeee.......eeeeeeeee...ee....eeeeeee......eeeeee.....hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d94 A   22 LLVVGPKFIRANQEYTLVISNFNSQLSKVDLLLKLE------LSVLNVTKMVDVRRNMNRMINFNMPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEGEELVSKTFEVKEYVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLKLKKELTVYGKGQVELRFDNFAMDADQQDVPVKVSFVEQYTNRTVVKQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEVSDVRFETTTTSDNDGLIKLELQPSEGTEQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDAGFMRPNKQPKYLLQLNATEKMIPRAKILIATVAGRTVVYDFADLDFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDLFWEDIGQVFDGFH----NEFDIFHSLGLFARTLDDILFDS--------------------------QESWLWKNVSIGRSGSRKLIEVVPDTTTSWYLTGFSIDPVYGLGIIKKPIQFTTVQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDTRFFCFDDHKNQTFPINLD--------STKIEFRLNPNLLTTVIKNLDHLLGVPTGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRNDYTVQLKYKKSAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFENRFQLDLEKQNTGSDYELRLKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNPISEQTKVNPIQKTEIRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVALKRPAYVVVYDYYNTNLNAIKVYEVDKQNLCEICDEEDCPAECG 1339
                                    31        41        51     |   -  |     71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571    |  581       591       601 |       -         -       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331        
                                                              57     64                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             576  581                   603                        630                                                                                                                                                                                            821      830
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D94)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D94)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D94)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (C9XI66_ANOGA | C9XI66)
molecular function
    GO:0004866    endopeptidase inhibitor activity    Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
biological process
    GO:0010951    negative regulation of endopeptidase activity    Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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  4d94
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 Related Entries

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(-) Related Entries Specified in the PDB File

4d93