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(-) Description

Title :  STRUCTURE OF E. COLI MATP-MATS COMPLEX
 
Authors :  P. Dupaigne, N. K. Tonthat, O. Espeli, T. Whitfill, F. Boccard, M. A. Sch
Date :  10 Jan 12  (Deposition) - 21 Nov 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.55
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A (1x),B (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x)
Biol. Unit 2:  C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x)
Biol. Unit 3:  C (1x),D (1x),E (1x),F (1x),G (1x),H (1x),I (1x),J (1x)
Biol. Unit 4:  A (1x),B (1x),K (1x),L (1x),M (1x),N (1x),O (1x),P (1x)
Keywords :  Macrodomains, Chromosome Organization, Chromosome Condensation, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Dupaigne, N. K. Tonthat, O. Espeli, T. Whitfill, F. Boccard, M. A. Schumacher
Molecular Basis For A Protein-Mediated Dna-Bridging Mechanism That Functions In Condensation Of The E. Coli Chromosome.
Mol. Cell V. 48 560 2012
PubMed-ID: 23084832  |  Reference-DOI: 10.1016/J.MOLCEL.2012.09.009

(-) Compounds

Molecule 1 - MACRODOMAIN TER PROTEIN
    Chains: B, A, D, C, H, G, L, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MATP, YCBG, B0956, JW0939
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: MATP
 
Molecule 2 - 5'-D(*TP*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*GP*AP *A)-3'
    Chains: N, F, J, P
    Engineered: YES
    Other Details: MATS STRAND 1
    Synthetic: YES
 
Molecule 3 - 5'-D(*TP*TP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*GP*AP *A)-3'
    Chains: M, E, I, O
    Engineered: YES
    Other Details: MATS STRAND 2
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): A (1x)B (1x)        K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)
Biological Unit 2 (1x):   C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)      
Biological Unit 3 (1x):   C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)I (1x)J (1x)      
Biological Unit 4 (1x): A (1x)B (1x)        K (1x)L (1x)M (1x)N (1x)O (1x)P (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4D8J)

(-) Sites  (0, 0)

(no "Site" information available for 4D8J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D8J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D8J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D8J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D8J)

(-) Exons   (0, 0)

(no "Exon" information available for 4D8J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j A   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j B   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain C from PDB  Type:PROTEIN  Length:148
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh..........................hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......eeeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j C   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain D from PDB  Type:PROTEIN  Length:149
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh...........hhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......eeeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j D   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         


Chain E from PDB  Type:DNA  Length:19
                                                   
                 4d8j E   1 TTCGTGACAATGTCACGAA  19
                                    10         


Chain F from PDB  Type:DNA  Length:19
                                                   
                 4d8j F   1 TTCGTGACATTGTCACGAA  19
                                    10         


Chain G from PDB  Type:PROTEIN  Length:148
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:148
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        
           MATP_ECOLI     2 KYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..............hhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j G   2 KYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        


Chain H from PDB  Type:PROTEIN  Length:148
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh.............hhhhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j H   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain I from PDB  Type:DNA  Length:19
                                                   
                 4d8j I   1 TTCGTGACAATGTCACGAA  19
                                    10         


Chain J from PDB  Type:DNA  Length:19
                                                   
                 4d8j J   1 TTCGTGACATTGTCACGAA  19
                                    10         


Chain K from PDB  Type:PROTEIN  Length:148
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j K   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLG 148
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140        


Chain L from PDB  Type:PROTEIN  Length:149
 aligned with MATP_ECOLI | P0A8N0 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         
           MATP_ECOLI     1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.....hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d8j L   1 MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVLLSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQRLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGK 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         


Chain M from PDB  Type:DNA  Length:19
                                                   
                 4d8j M   1 TTCGTGACAATGTCACGAA  19
                                    10         


Chain N from PDB  Type:DNA  Length:19
                                                   
                 4d8j N   1 TTCGTGACATTGTCACGAA  19
                                    10         


Chain O from PDB  Type:DNA  Length:19
                                                   
                 4d8j O   1 TTCGTGACAATGTCACGAA  19
                                    10         


Chain P from PDB  Type:DNA  Length:19
                                                   
                 4d8j P   1 TTCGTGACATTGTCACGAA  19
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D8J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D8J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D8J)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,G,H,K,L   (MATP_ECOLI | P0A8N0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051276    chromosome organization    A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome.
    GO:0007059    chromosome segregation    The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles.
cellular component
    GO:0097047    DNA replication termination region    A chromosomal region that contains fork pausing elements influencing the progression and merging of DNA replication forks.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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3vea 3veb