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(-)Asym./Biol. Unit
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(-) Description

Title :  X-RAY STRUCTURE OF A PEROXIREDOXIN
 
Authors :  V. Staudacher, C. F. Djuika, J. Koduka, S. Schlossarek, J. Kopp, M. Buec M. Lanzer, M. Deponte
Date :  19 Nov 14  (Deposition) - 13 May 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase, Antioxidant Protein, Prx5, Redox Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Staudacher, C. F. Djuika, J. Koduka, S. Schlossarek, J. Kopp, M. Buechler, M. Lanzer, M. Deponte
Plasmodium Falciparum Antioxidant Protein Reveals A Novel Mechanism For Balancing Turnover And Inactivation Of Peroxiredoxins
Free Radic. Biol. Med. V. 85 228 2015
PubMed-ID: 25952724  |  Reference-DOI: 10.1016/J.FREERADBIOMED.2015.04.030

(-) Compounds

Molecule 1 - 1-CYS PEROXIREDOXIN
    Chains: A
    EC Number: 1.11.1.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: MALARIA PARASITE P. FALCIPARUM
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833
 
Molecule 2 - 1-CYS PEROXIREDOXIN
    Chains: B
    EC Number: 1.11.1.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: XL1-BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: MALARIA PARASITE P. FALCIPARUM
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1OCS1Mod. Amino AcidCYSTEINESULFONIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 4D73)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D73)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D73)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D73)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D73)

(-) Exons   (0, 0)

(no "Exon" information available for 4D73)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeehhhhh...eeeeehhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhh....eeee...hhhhhhh..eee.hhhh..eee..eeeeee..eeeeeee................hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d73 A  59 IKENDLIPNVKVMIDVRNMNPNDFTSIDTHELFNNKKILLISMPGAFTPTcSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNN 238
                                    68        78|       96       106       116|      126       136       146       156       166       176       186       196       206       216       226       236  
                                              78|                           117-OCS                                                                                                                     
                                               87                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeehhhhh...........eeeeehhhhh...eeeeee......hhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh.....eeee...hhhhhhh..eee.hhhh..eee..eeeeee..eeeeeee................hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d73 B  63 DLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISMPGAFTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKN 237
                                    72        82        92       102       112 ||    127       137       147       157       167       177       187       197       207       217       227       237
                                                                             114|                                                                                                                     
                                                                              120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D73)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D73)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D73)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  4d73
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  1.11.1.15
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5MYR6_PLAF7 | Q5MYR6: 1xiy

(-) Related Entries Specified in the PDB File

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