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(-)Asym./Biol. Unit
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(-) Description

Title :  STRUCTURE OF PORIN OMP-PST1 FROM P. STUARTII; THE CRYSTALLOGRAPHIC SYMMETRY GENERATES A DIMER OF TRIMERS.
 
Authors :  C. Nasrallah, J. P. Colletier
Date :  08 Nov 14  (Deposition) - 09 Mar 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transport Protein, Bacterial Junction, Steric-Zipper, Dimer Of Trimers (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Nasrallah, M. Khatib, H. Basbous, Q. T. Tran, D. Fenel, B. Gallet, M. Lethier, W. Song, G. Schoehn, J. M. Bolla, M. Vivaudou, J. M. Pages, M. Weik, M. Winterhalter, J. P. Colletier
Zipper-Enabled Porin Self-Association And Biofilm Formation In P. Stuartii
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PORIN 1
    Atcc: 29914
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PG_OMP-PST1
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: DELTA-OMP8
    Expression System Vector Type: PLASMID
    Organism Scientific: PROVIDENCIA STUARTII
    Organism Taxid: 588

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (0, 0)

(no "Site" information available for 4D64)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D64)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D64)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D64)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D64)

(-) Exons   (0, 0)

(no "Exon" information available for 4D64)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeeee..........ee................................................................hhhhhhhhh..............................hhhhh......................hhhhh............................hhhhhh.eeee..eeee..................................ee....ee.......................................................................hhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d64 A   1 AEVYNKDGNKLDVYGKVDVRHYFASADKGKKSEDGDDSRVRLGVKGDTQITDQLTGFGRFEWETKTNKAENEGENKNRLAYAGLKFADFGSIDYGRNYGVVYDTNAWTDVFPLWGADTMAQTDNFMTSRNRNLLTYRNNNAFGYVDGLSFALQYQGKNGDNNKSSAGMAKDNGDGYGFSTAYELGWGVTLGGGYSSSSRTPNQKAGVVTSEGDSYYSATGKRAQAWNVGGKFDANNVYLAAMYGQTQNTSRYGDLDLIANKTENVELVAQYLFDFGLKPSIGYNQSKGKNLGNGYDNQDLVKYISVGSYYYFNKNMSAVVDYKINLLKDNDFTKEYGINTDNVLGLGLVYQF 352
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Chain B from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeeeeeeeeeeeeee...........ee................................................................hhhhhhhhh..........................................................................................hhhhhh.eeee..eeee..................................ee....ee.......................................................................hhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d64 B   1 AEVYNKDGNKLDVYGKVDVRHYFASADKGKKSEDGDDSRVRLGVKGDTQITDQLTGFGRFEWETKTNKAENEGENKNRLAYAGLKFADFGSIDYGRNYGVVYDTNAWTDVFPLWGADTMAQTDNFMTSRNRNLLTYRNNNAFGYVDGLSFALQYQGKNGDNNKSSAGMAKDNGDGYGFSTAYELGWGVTLGGGYSSSSRTPNQKAGVVTSEGDSYYSATGKRAQAWNVGGKFDANNVYLAAMYGQTQNTSRYGDLDLIANKTENVELVAQYLFDFGLKPSIGYNQSKGKNLGNGYDNQDLVKYISVGSYYYFNKNMSAVVDYKINLLKDNDFTKEYGINTDNVLGLGLVYQF 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain C from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeeeeeeeeeeeee...........ee................................................................hhhhhhhhh..............................hhhhh......................hhhhh............................hhhhhh.eeee..eeee..................................ee....ee.......................................................................hhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d64 C   1 AEVYNKDGNKLDVYGKVDVRHYFASADKGKKSEDGDDSRVRLGVKGDTQITDQLTGFGRFEWETKTNKAENEGENKNRLAYAGLKFADFGSIDYGRNYGVVYDTNAWTDVFPLWGADTMAQTDNFMTSRNRNLLTYRNNNAFGYVDGLSFALQYQGKNGDNNKSSAGMAKDNGDGYGFSTAYELGWGVTLGGGYSSSSRTPNQKAGVVTSEGDSYYSATGKRAQAWNVGGKFDANNVYLAAMYGQTQNTSRYGDLDLIANKTENVELVAQYLFDFGLKPSIGYNQSKGKNLGNGYDNQDLVKYISVGSYYYFNKNMSAVVDYKINLLKDNDFTKEYGINTDNVLGLGLVYQF 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D64)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D64)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D64)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4d5w STRUCTURE OF THE DIMERIZATION MOTIF BETWEEN FACING MONOMERS IN OMP-PST1 DIMERS OF TRIMERS (206-GVVTSE- 211, STERIC ZIPPER OF CLASS I)
4d5x STRUCTURE OF THE DIMERIZATION MOTIF BETWEEN FACING MONOMERS IN OMP-PST2 DIMERS OF TRIMERS (283-LGNY-286 ; STERIC ZIPPER OF CLASS III)
4d65 STRUCTURE OF PORIN OMP-PST2 FROM P. STUARTII;THE ASYMMETRIC UNIT CONTAINS A DIMER OF TRIMERS.