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(-) Description

Title :  GONADOTROPIN-RELEASING HORMONE AGONIST
 
Authors :  P. Legrand, M. -H. Le Du, C. Valery, S. Deville-Foillard, M. Paternost F. Artzner
Date :  05 Nov 14  (Deposition) - 12 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.85
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hormone, Gnrh, Lhrh, D-Trp, Decapeptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Valery, S. Deville-Foillard, C. Lefebvre, N. Taberner, P. Legrand F. Meneau, C. Meriadec, C. Delvaux, T. Bizien, E. Kasotakis, C. Lopez-Iglesias, A. Gall, S. Bressanelli, M. -H. Le Du, M. Paternostre, F. Artzner
Atomic View Of The Histidine Environment Stabilizing Higher- Ph Conformations Of Ph-Dependent Proteins.
Nat. Commun. V. 6 7771 2015
PubMed-ID: 26190377  |  Reference-DOI: 10.1038/NCOMMS8771

(-) Compounds

Molecule 1 - TRIPTORELIN
    Chains: A, B, C, D
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: TRIPTORELIN IS A MEDICINE AVAILABLE IN A NUMBER OF COUNTRIES WORLDWIDE. IT IS AN ANALOGOUS OF THE GONADOTROPIN-RELEASING HORMONE. 5-OXO-D-PROLYL-L-HISTIDYL- L-TRYPTOPHANYL-L-SERYL-L-TYROSYL-D-TRYPTOPHANYL-L-LEUCYL-L- ARGINYL-L-PROLYL-L-GLYCINAMIDE.
    Other Details - Source: TRIPTORELIN IS A MEDICINE AVAILABLE IN A NUMBER OF COUNTRIES WORLDWIDE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric Unit (4, 15)
No.NameCountTypeFull Name
1DTR4Mod. Amino AcidD-TRYPTOPHAN
2NH24Mod. Amino AcidAMINO GROUP
3PCA4Mod. Amino AcidPYROGLUTAMIC ACID
4PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 4)
No.NameCountTypeFull Name
1DTR1Mod. Amino AcidD-TRYPTOPHAN
2NH21Mod. Amino AcidAMINO GROUP
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 4)
No.NameCountTypeFull Name
1DTR1Mod. Amino AcidD-TRYPTOPHAN
2NH21Mod. Amino AcidAMINO GROUP
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 3 (4, 4)
No.NameCountTypeFull Name
1DTR1Mod. Amino AcidD-TRYPTOPHAN
2NH21Mod. Amino AcidAMINO GROUP
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1DTR1Mod. Amino AcidD-TRYPTOPHAN
2NH21Mod. Amino AcidAMINO GROUP
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4PO4-1Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC5SOFTWAREPCA C:1 , HIS C:2 , ARG C:8 , HOH C:2001 , HOH C:2003 , HOH C:2015 , PCA D:1 , HIS D:2 , ARG D:8 , GLY D:10 , HOH D:2001BINDING SITE FOR RESIDUE PO4 C1011
2AC6SOFTWAREHIS A:2 , PCA B:1 , ARG B:8 , GLY B:10 , HOH B:2001 , HOH B:2003BINDING SITE FOR RESIDUE PO4 B1011
3AC7SOFTWAREPCA A:1 , ARG A:8 , GLY A:10 , HOH A:2001 , HOH A:2003 , HOH A:2015 , HIS B:2BINDING SITE FOR RESIDUE PO4 A1011

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D5M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D5M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D5M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D5M)

(-) Exons   (0, 0)

(no "Exon" information available for 4D5M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  4d5m A  1 xHWSYxLRPGx 11
                            |    |  10|
                            |    |    |
                            1-PCA|    |
                                 6-DTR|
                                     11-NH2


Chain B from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  4d5m B  1 xHWSYxLRPGx 11
                            |    |  10|
                            |    |    |
                            1-PCA|    |
                                 6-DTR|
                                     11-NH2


Chain C from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  4d5m C  1 xHWSYxLRPGx 11
                            |    |  10|
                            |    |    |
                            1-PCA|    |
                                 6-DTR|
                                     11-NH2


Chain D from PDB  Type:PROTEIN  Length:11
                                          
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  4d5m D  1 xHWSYxLRPGx 11
                            |    |  10|
                            |    |    |
                            1-PCA|    |
                                 6-DTR|
                                     11-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D5M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D5M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D5M)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

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