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(-) Description

Title :  CRYSTAL STRUCTURE OF E. COLI FABI IN COMPLEX WITH NAD AND 5-BROMO-2-(4-CHLORO-2-HYDROXYPHENOXY)BENZONITRILE
 
Authors :  M. Tareilus, J. Schiebel, A. Chang, P. J. Tonge, C. A. Sotriffer, C. Kis
Date :  26 Oct 14  (Deposition) - 04 Mar 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Enoyl-Acp Reductase, Short-Chain Dehydrogenase/Reductase Superfamily, Escherichia Coli, Fatty Acid Biosynthesis, Lipid Synthesis, Ecfabi, Fabi, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Schiebel, A. Chang, B. Merget, G. R. Bommineni, W. Yu, L. A. Spagnuolo, M. V. Baxter, M. Tareilus, P. J. Tonge, C. Kisker, C. A. Sotriffer
An Ordered Water Channel In Staphylococcus Aureus Fabi: Unraveling The Mechanism Of Substrate Recognition And Reduction.
Biochemistry V. 54 1943 2015
PubMed-ID: 25706582  |  Reference-DOI: 10.1021/BI5014358

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]
    Chains: A, B
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 469008
    Strain: BL21(DE3)
    Synonym: ENOYL-ACP REDUCTASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1J472Ligand/Ion5-BROMO-2-(4-CHLORO-2-HYDROXYPHENOXY)BENZONITRILE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1J474Ligand/Ion5-BROMO-2-(4-CHLORO-2-HYDROXYPHENOXY)BENZONITRILE
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , VAL A:14 , ALA A:15 , SER A:19 , ILE A:20 , GLN A:40 , LEU A:44 , CYS A:63 , ASP A:64 , VAL A:65 , SER A:91 , ILE A:92 , LEU A:144 , SER A:145 , LYS A:163 , ALA A:189 , GLY A:190 , PRO A:191 , ILE A:192 , J47 A:1259 , HOH A:2009 , HOH A:2010 , HOH A:2012 , HOH A:2014 , HOH A:2083 , HOH A:2156BINDING SITE FOR RESIDUE NAD A1258
2AC2SOFTWAREGLY B:13 , ALA B:15 , SER B:19 , ILE B:20 , GLN B:40 , CYS B:63 , ASP B:64 , VAL B:65 , SER B:91 , ILE B:92 , LEU B:144 , SER B:145 , LYS B:163 , ALA B:189 , GLY B:190 , PRO B:191 , ILE B:192 , THR B:194 , LEU B:195 , ALA B:196 , J47 B:1258 , HOH B:2006 , HOH B:2007 , HOH B:2016 , HOH B:2037BINDING SITE FOR RESIDUE NAD B1257
3AC3SOFTWAREGLY A:93 , ALA A:95 , LEU A:100 , TYR A:146 , TYR A:156 , NAD A:1258BINDING SITE FOR RESIDUE J47 A1259
4AC4SOFTWAREGLY B:93 , ALA B:95 , LEU B:100 , TYR B:146 , TYR B:156 , ALA B:196 , NAD B:1257BINDING SITE FOR RESIDUE J47 B1258

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4D46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4D46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D46)

(-) Exons   (0, 0)

(no "Exon" information available for 4D46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.............hhhhhhhhhhhhhhhhhh.....eeee..hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d46 A   2 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMN 257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191||     219       229       239       249        
                                                                                                                                                                                                                        192|                                              
                                                                                                                                                                                                                         211                                              


Chain B from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhh....eeeeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhh................hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d46 B   2 GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAM 256
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201 ||    217       227       237       247         
                                                                                                                                                                                                                                   203|                                              
                                                                                                                                                                                                                                    210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4D46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D46)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4D46)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4d41 CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-HEXYL-2-(4-NITROPHENOXY)PHENOL
4d42 CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 4-FLUORO-5-HEXYL-2-PHENOXYPHENOL
4d43 CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 2-(2-CHLORO-4-NITROPHENOXY)-5-ETHYL-4- FLUOROPHENOL
4d44 CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-ETHYL-4-FLUORO-2-((2-FLUOROPYRIDIN-3-YL )OXY)PHENOL
4d45 CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-BROMO-2-(4-CHLORO-2-HYDROXYPHENOXY) BENZONITRILE