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(-) Description

Title :  STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS ABYSSII AT PH 8.
 
Authors :  D. Woehlert, W. Kuhlbrandt, O. Yildiz
Date :  16 Apr 14  (Deposition) - 17 Dec 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Membrane Protein, Antiporter, Transporter, Exchanger, Cpa (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Wohlert, W. Kuhlbrandt, O. Yildiz
Structure And Substrate Ion Binding In The Sodium/Proton Antiporter Panhap.
Elife V. 3 03579 2014
PubMed-ID: 25426802  |  Reference-DOI: 10.7554/ELIFE.03579

(-) Compounds

Molecule 1 - NA+/H+ ANTIPORTER, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector: PET21A
    Expression System Vector Type: PLASMID
    Fragment: TRANSPORTER DOMAIN, RESIDUES 1-422
    Organism Scientific: PYROCOCCUS ABYSSI GE5
    Organism Taxid: 272844
    Synonym: PANHAP ANTIPORTER

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 20)

Asymmetric/Biological Unit (5, 20)
No.NameCountTypeFull Name
1BOG1Ligand/IonB-OCTYLGLUCOSIDE
2FLC2Ligand/IonCITRATE ANION
3MSE13Mod. Amino AcidSELENOMETHIONINE
4PTY1Ligand/IonPHOSPHATIDYLETHANOLAMINE
5TAM3Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:289 , HIS A:292 , ASP A:295 , HIS B:292BINDING SITE FOR RESIDUE BOG A1423
2AC2SOFTWAREHIS B:75 , LEU B:77 , SER B:78 , GLY B:266BINDING SITE FOR RESIDUE FLC B1423
3AC3SOFTWAREPRO B:44 , LEU B:45 , LYS B:47 , GLN B:145BINDING SITE FOR RESIDUE FLC B1424
4AC4SOFTWAREGLU A:56 , ASP A:59 , PHE A:60 , PHE A:64 , LEU A:376 , LYS A:379 , PHE B:64BINDING SITE FOR RESIDUE PTY A1424
5AC5SOFTWARETYR A:31 , ILE A:69 , GLU A:73 , ASP A:295 , THR A:302 , VAL A:364 , HOH A:2001BINDING SITE FOR RESIDUE TAM A1425
6AC6SOFTWARESER A:5 , ASP B:59 , PHE B:60 , VAL B:63BINDING SITE FOR RESIDUE TAM B1425
7AC7SOFTWAREMSE A:21 , ARG A:25BINDING SITE FOR RESIDUE TAM A1426

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CZ8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:229 -Pro A:230
2Phe B:229 -Pro B:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CZ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CZ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4CZ8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cz8 A   1 mIELSLAEALFLILFTGVISmLISRRTGISYVPIFILTGLVIGPLLKLIPRDLAHEIFDFVRVFGLVIILFTEGHNLSWRLLKKNmPTIVTLDTIGLILTALIAGFIFKVVFNSSFLLGFLFGAIIGATDPATLIPLFRQYRVKQDIETVIVTESIFNDPLGIVLTLIAISmLVPGYGGGIFSTLSEKLGIYAGGVIYFLYNVSVSISLGIFLGILGYKFIKRTGIFDFPEIEAFSLSLAFLGFFIGERLDASGYLVATVTGIVLGNYKLLKPRENIRILKRLQRAIEKEVHFNDTLAALATIFIFVLLGAEmNLEVIWSNLGKGLLVALGVmILARPLATLPLLKWWNFREYLFIALEGPRGVVPSALASLPLSLALKYKSPLLTVHWGEIImATVVITVLTSVIVETLWIPILKDKLDVG 422
                            |       10        20|       30        40        50        60        70        80     |  90       100       110       120       130       140       150       160       170 |     180       190       200       210       220       230       240       250       260       270       280       290       300       310  |    320       330  |    340       350       360       370       380       390   |   400       410       420  
                            |                  21-MSE                                                           86-MSE                                                                               172-MSE                                                                                                                                      313-MSE             333-MSE                                                      394-MSE                        
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cz8 B   2 IELSLAEALFLILFTGVISmLISRRTGISYVPIFILTGLVIGPLLKLIPRDLAHEIFDFVRVFGLVIILFTEGHNLSWRLLKKNmPTIVTLDTIGLILTALIAGFIFKVVFNSSFLLGFLFGAIIGATDPATLIPLFRQYRVKQDIETVIVTESIFNDPLGIVLTLIAISmLVPGYGGGIFSTLSEKLGIYAGGVIYFLYNVSVSISLGIFLGILGYKFIKRTGIFDFPEIEAFSLSLAFLGFFIGERLDASGYLVATVTGIVLGNYKLLKPRENIRILKRLQRAIEKEVHFNDTLAALATIFIFVLLGAEmNLEVIWSNLGKGLLVALGVmILARPLATLPLLKWWNFREYLFIALEGPRGVVPSALASLPLSLALKYKSPLLTVHWGEIImATVVITVLTSVIVETLWIPILKDKLDVG 422
                                    11        21        31        41        51        61        71        81    |   91       101       111       121       131       141       151       161       171|      181       191       201       211       221       231       241       251       261       271       281       291       301       311 |     321       331 |     341       351       361       371       381       391  |    401       411       421 
                                              21-MSE                                                           86-MSE                                                                               172-MSE                                                                                                                                      313-MSE             333-MSE                                                      394-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CZ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CZ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CZ8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q9UZ55_PYRAB | Q9UZ55
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9UZ55_PYRAB | Q9UZ55: 4cz9 4cza

(-) Related Entries Specified in the PDB File

4cz9 STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS ABYSSII AT PH 4.
4cza STRUCTURE OF THE SODIUM PROTON ANTIPORTER PANHAP FROM PYROCOCCUS ABYSSII WITH BOUND THALLIUM ION.
4czb STRUCTURE OF THE SODIUM PROTON ANTIPORTER MJNHAP1 FROM METHANOCALDOCOCCUS JANNASCHII AT PH 8.