4CUC - JenaLib

Title :   UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA.

Authors :   A. K. Singh, B. Pluvinage, M. A. Higgins, A. B. Dalia, M. Flynn, A. R. Lloy J. N. Weiser, K. A. Stubbs, A. B. Boraston, S. J. King

Date :   17 Mar 14 (Deposition) - 20 Aug 14 (Release) - 24 Sep 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Singh, B. Pluvinage, M. A. Higgins, A. B. Dalia, S. A. Woodiga, M. Flynn, A. R. Lloyd, J. N. Weiser, K. A. Stubbs, A. B. Boraston, S. J. King
Unravelling The Multiple Functions Of The Architecturally Intricate Streptococcus Pneumoniae Beta-Galactosidase, Bgaa
Plos Pathog. V. 10 04364 2014
PubMed-ID: 25210925 | Reference-DOI: 10.1371/JOURNAL.PPAT.1004364

Compounds

Molecule 1 - BETA-GALACTOSIDASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PET28A
	Expression System Vector Type	:	PLASMID
	Fragment	:	CATALYTIC MODULE, RESIDUES 137-985
	Mutation	:	YES
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4
	Synonym	:	GLYCOSIDE HYDROLASE 2

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 13)

Asymmetric Unit (4, 13)

No.	Name	Count	Type	Full Name
1	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
2	MPD	5	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 26)

No.	Name	Count	Type	Full Name
1	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
2	MPD	10	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
3	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	SO4	12	Ligand/Ion	SULFATE ION

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:151 , GLN A:302 , LYS A:311 , ASN A:312 , LYS A:418 , ASP A:420 , HOH A:2013 , HOH A:2179	BINDING SITE FOR RESIDUE SO4 A1986
02	AC2	SOFTWARE	LYS A:809 , TRP A:835 , LYS A:836 , HOH A:2617 , HOH A:2663	BINDING SITE FOR RESIDUE SO4 A1987
03	AC3	SOFTWARE	LYS A:664 , ARG A:682 , GLY A:684 , HOH A:2545 , HOH A:2546	BINDING SITE FOR RESIDUE SO4 A1988
04	AC4	SOFTWARE	LEU A:182 , ASP A:183 , GLN A:917 , HOH A:2035 , HOH A:2746 , HOH A:2748 , HOH A:2799	BINDING SITE FOR RESIDUE SO4 A1989
05	AC5	SOFTWARE	LYS A:874 , GLN A:975 , VAL A:976 , THR A:977 , HOH A:2793 , HOH A:2794 , HOH A:2795	BINDING SITE FOR RESIDUE SO4 A1990
06	AC6	SOFTWARE	GLN A:156 , ASN A:157 , LYS A:216 , HOH A:2015 , HOH A:2082	BINDING SITE FOR RESIDUE SO4 A1991
07	AC7	SOFTWARE	LYS A:590 , ARG A:592 , TYR A:593	BINDING SITE FOR RESIDUE MPD A1992
08	AC8	SOFTWARE	GLY A:865 , LYS A:866 , SER A:896 , HOH A:2690	BINDING SITE FOR RESIDUE MPD A1993
09	AC9	SOFTWARE	PRO A:659 , TYR A:678 , ASN A:680 , ARG A:789 , HOH A:2549	BINDING SITE FOR RESIDUE MPD A1994
10	BC1	SOFTWARE	ASN A:722 , ASN A:724 , GLN A:725 , HOH A:2567 , HOH A:2569	BINDING SITE FOR RESIDUE MPD A1995
11	BC2	SOFTWARE	GLY A:608 , GLY A:609 , LYS A:773	BINDING SITE FOR RESIDUE MPD A1996
12	BC3	SOFTWARE	ARG A:288 , GLU A:564 , ASP A:599 , ARG A:602 , TYR A:624 , GLN A:645 , TRP A:685 , TRP A:708 , GLU A:716 , THR A:718 , HOH A:2163 , HOH A:2797	BINDING SITE FOR POLY-SACCHARIDE RESIDUES GAL A1984 THROUGH NAG A1985

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

Asymmetric Unit

No.	Residues
1	Leu A:184	-	Pro A:185
2	Tyr A:237	-	Met A:238
3	Gln A:284	-	Pro A:285
4	Thr A:483	-	His A:484
5	Trp A:708	-	Thr A:709
6	Thr A:718	-	Pro A:719
7	Leu A:765	-	Pro A:766

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:847
 aligned with A0A0H2UP19_S | A0A0H2UP19 from UniProtKB/TrEMBL  Length:2233

    Alignment length:847
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       
         A0A0H2UP19_S   137 AVTNEEVNQMIEDRKVDFNQNWYFKLNANSKEAIKPDADVSTWKKLDLPYDWSIFNDFDHESPAQNEGGQLNGGEAWYRKTFKLDEKDLKKNVRLTFDGVYMDSQVYVNGQLVGHYPNGYNQFSYDITKYLQKDGRENVIAVHAVNKQPSSRWYSGSGIYRDVTLQVTDKVHVEKNGTTILTPKLEEQQHGKVETHVTSKIVNTDDKDHELVAEYQIVERGGHAVTGLVRTASRTLKAHESTSLDAILEVERPKLWTVLNDKPALYELITRVYRDGQLVDAKKDLFGYRYYHWTPNEGFSLNGERIKFHGVSLHHDHGALGAEENYKAEYRRLKQMKEMGVNSIRTTHNPASEQTLQIAAELGLLVQEEAFDTWYGGKKPYDYGRFFEKDATHPEARKGEKWSDFDLRTMVERGKNNPAIFMWSIGNEIGEANGDAHSLATVKRLVKVIKDVDKTRYVTMGADKFRFGNGSGGHEKIADELDAVGFNYSEDNYKALRAKHPKWLIYGSETSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQFIWTGTDYIGEPTPWHNQNQTPVKSSYFGIVDTAGIPKHDFYLYQSQWVSVKKKPMVHLLPHWNWENKELASKVADSEGKIPVRAYSNASSVELFLNGKSLGLKTFNKKQTSDGRTYQEGANANELYLEWKVAYQPGTLEAIARDESGKEIARDKITTAGKPAAVRLIKEDHAIAADGKDLTYIYYEIVDSQGNVVPTANNLVRFQLHGQGQLVGVDNGEQASRERYKAQADGSWIRKAFNGKGVAIVKSTEQAGKFTLTAHSDLLKSNQVTVFTGKK 983
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhheee....eeeee..hhhhhhh........eee...ee.hhhh........hhhhh....eeeeeeeee..hhhhh..eeeeee......eeeee..eeeeee......eeee.hhhhhhhhh.eeeeeeeee...........ee...eeeeee..eeeeeeeeeee..hhhhhh..eeeeeeeeeeee.....eeeeeeeeeee.........ee...eee....eeeeeeeeeee..............eeeeeeeee..eeeeeeeeee....eeee...eeee..eee.eeeeee...hhhhh...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh.eeeee............hhhhhh.............hhhhhhhhhhhhhhh....eeeeeeee.......hhhhhhhhhhhhhhhhh.....eeeeeehhhhh......hhhhhh...eeeee.hhhhhhhhhhhh....eeeeeee...............ee...hhhhh........ee.....hhhhhhhhhhhh..eeeeeee..................................hhhhhhhhhhhh.......eeee......hhhhhhh......eeeeeeee...eeeeee..eeeeeee.eeee.....eeee........eeeeee....eeeeeee.....eeeeeeee......eeeeee...eee.....eeeeeeeee............eeeeeeee.eeeeeee.................eeee....eeeeeeee....eeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cuc A 137 AVTNEEVNQMIEDRKVDFNQNWYFKLNANSKEAIKPDADVSTWKKLDLPYDWSIFNDFDHESPAQNEGGQLNGGEAWYRKTFKLDEKDLKKNVRLTFDGVYMDSQVYVNGQLVGHYPNGYNQFSYDITKYLQKDGRENVIAVHAVNKQPSSRWYSGSGIYRDVTLQVTDKVHVEKNGTTILTPKLEEQQHGKVETHVTSKIVNTDDKDHELVAEYQIVERGGHAVTGLVRTASRTLKAHESTSLDAILEVERPKLWTVLNDKPALYELITRVYRDGQLVDAKKDLFGYRYYHWTPNEGFSLNGERIKFHGVSLHHDHGALGAEENYKAEYRRLKQMKEMGVNSIRTTHNPASEQTLQIAAELGLLVQEEAFDTWYGGKKPYDYGRFFEKDATHPEARKGEKWSDFDLRTMVERGKNNPAIFMWSIGNEIGEANGDAHSLATVKRLVKVIKDVDKTRYVTMGADKFRFGNGSGGHEKIADELDAVGFNYSEDNYKALRAKHPKWLIYGSQTSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQFIWTGTDYIGEPTPWHNQNQTPVKSSYFGIVDTAGIPKHDFYLYQSQWVSVKKKPMVHLLPHWNWENKELASKVADSEGKIPVRAYSNASSVELFLNGKSLGLKTFNKKQTSDGRTYQEGANANELYLEWKVAYQPGTLEAIARDESGKEIARDKITTAGKPAAVRLIKEDHAIAADGKDLTYIYYEIVDSQGNVVPTANNLVRFQLHGQGQLVGVDNGEQASRERYKAQADGSWIRKAFNGKGVAIVKSTEQAGKFTLTAHSDLLKSNQVTVFTGKK 983
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
		Gln A:284 - Pro A:285	[ RasMol ]
		Leu A:184 - Pro A:185	[ RasMol ]
		Leu A:765 - Pro A:766	[ RasMol ]
		Thr A:483 - His A:484	[ RasMol ]
		Thr A:718 - Pro A:719	[ RasMol ]
		Trp A:708 - Thr A:709	[ RasMol ]
		Tyr A:237 - Met A:238	[ RasMol ]

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4cu6	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu7	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu8	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu9	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cua	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cub	UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA

Description