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(-) Description

Title :  UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA.
 
Authors :  A. K. Singh, B. Pluvinage, M. A. Higgins, A. B. Dalia, M. Flynn, A. R. Lloy J. N. Weiser, K. A. Stubbs, A. B. Boraston, S. J. King
Date :  17 Mar 14  (Deposition) - 20 Aug 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Singh, B. Pluvinage, M. A. Higgins, A. B. Dalia, S. A. Woodiga, M. Flynn, A. R. Lloyd, J. N. Weiser, K. A. Stubbs, A. B. Boraston, S. J. King
Unravelling The Multiple Functions Of The Architecturally Intricate Streptococcus Pneumoniae Beta-Galactosidase, Bgaa
Plos Pathog. V. 10 04364 2014
PubMed-ID: 25210925  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004364

(-) Compounds

Molecule 1 - BETA-GALACTOSIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC MODULE, RESIDUES 137-985
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4
    Synonym: GLYCOSIDE HYDROLASE 2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric Unit (4, 13)
No.NameCountTypeFull Name
1GAL1Ligand/IonBETA-D-GALACTOSE
2MPD5Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO46Ligand/IonSULFATE ION
Biological Unit 1 (4, 26)
No.NameCountTypeFull Name
1GAL2Ligand/IonBETA-D-GALACTOSE
2MPD10Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO412Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:151 , GLN A:302 , LYS A:311 , ASN A:312 , LYS A:418 , ASP A:420 , HOH A:2013 , HOH A:2179BINDING SITE FOR RESIDUE SO4 A1986
02AC2SOFTWARELYS A:809 , TRP A:835 , LYS A:836 , HOH A:2617 , HOH A:2663BINDING SITE FOR RESIDUE SO4 A1987
03AC3SOFTWARELYS A:664 , ARG A:682 , GLY A:684 , HOH A:2545 , HOH A:2546BINDING SITE FOR RESIDUE SO4 A1988
04AC4SOFTWARELEU A:182 , ASP A:183 , GLN A:917 , HOH A:2035 , HOH A:2746 , HOH A:2748 , HOH A:2799BINDING SITE FOR RESIDUE SO4 A1989
05AC5SOFTWARELYS A:874 , GLN A:975 , VAL A:976 , THR A:977 , HOH A:2793 , HOH A:2794 , HOH A:2795BINDING SITE FOR RESIDUE SO4 A1990
06AC6SOFTWAREGLN A:156 , ASN A:157 , LYS A:216 , HOH A:2015 , HOH A:2082BINDING SITE FOR RESIDUE SO4 A1991
07AC7SOFTWARELYS A:590 , ARG A:592 , TYR A:593BINDING SITE FOR RESIDUE MPD A1992
08AC8SOFTWAREGLY A:865 , LYS A:866 , SER A:896 , HOH A:2690BINDING SITE FOR RESIDUE MPD A1993
09AC9SOFTWAREPRO A:659 , TYR A:678 , ASN A:680 , ARG A:789 , HOH A:2549BINDING SITE FOR RESIDUE MPD A1994
10BC1SOFTWAREASN A:722 , ASN A:724 , GLN A:725 , HOH A:2567 , HOH A:2569BINDING SITE FOR RESIDUE MPD A1995
11BC2SOFTWAREGLY A:608 , GLY A:609 , LYS A:773BINDING SITE FOR RESIDUE MPD A1996
12BC3SOFTWAREARG A:288 , GLU A:564 , ASP A:599 , ARG A:602 , TYR A:624 , GLN A:645 , TRP A:685 , TRP A:708 , GLU A:716 , THR A:718 , HOH A:2163 , HOH A:2797BINDING SITE FOR POLY-SACCHARIDE RESIDUES GAL A1984 THROUGH NAG A1985

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4CUC)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Leu A:184 -Pro A:185
2Tyr A:237 -Met A:238
3Gln A:284 -Pro A:285
4Thr A:483 -His A:484
5Trp A:708 -Thr A:709
6Thr A:718 -Pro A:719
7Leu A:765 -Pro A:766

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CUC)

(-) Exons   (0, 0)

(no "Exon" information available for 4CUC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:847
 aligned with A0A0H2UP19_S | A0A0H2UP19 from UniProtKB/TrEMBL  Length:2233

    Alignment length:847
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976       
         A0A0H2UP19_S   137 AVTNEEVNQMIEDRKVDFNQNWYFKLNANSKEAIKPDADVSTWKKLDLPYDWSIFNDFDHESPAQNEGGQLNGGEAWYRKTFKLDEKDLKKNVRLTFDGVYMDSQVYVNGQLVGHYPNGYNQFSYDITKYLQKDGRENVIAVHAVNKQPSSRWYSGSGIYRDVTLQVTDKVHVEKNGTTILTPKLEEQQHGKVETHVTSKIVNTDDKDHELVAEYQIVERGGHAVTGLVRTASRTLKAHESTSLDAILEVERPKLWTVLNDKPALYELITRVYRDGQLVDAKKDLFGYRYYHWTPNEGFSLNGERIKFHGVSLHHDHGALGAEENYKAEYRRLKQMKEMGVNSIRTTHNPASEQTLQIAAELGLLVQEEAFDTWYGGKKPYDYGRFFEKDATHPEARKGEKWSDFDLRTMVERGKNNPAIFMWSIGNEIGEANGDAHSLATVKRLVKVIKDVDKTRYVTMGADKFRFGNGSGGHEKIADELDAVGFNYSEDNYKALRAKHPKWLIYGSETSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQFIWTGTDYIGEPTPWHNQNQTPVKSSYFGIVDTAGIPKHDFYLYQSQWVSVKKKPMVHLLPHWNWENKELASKVADSEGKIPVRAYSNASSVELFLNGKSLGLKTFNKKQTSDGRTYQEGANANELYLEWKVAYQPGTLEAIARDESGKEIARDKITTAGKPAAVRLIKEDHAIAADGKDLTYIYYEIVDSQGNVVPTANNLVRFQLHGQGQLVGVDNGEQASRERYKAQADGSWIRKAFNGKGVAIVKSTEQAGKFTLTAHSDLLKSNQVTVFTGKK 983
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhheee....eeeee..hhhhhhh........eee...ee.hhhh........hhhhh....eeeeeeeee..hhhhh..eeeeee......eeeee..eeeeee......eeee.hhhhhhhhh.eeeeeeeee...........ee...eeeeee..eeeeeeeeeee..hhhhhh..eeeeeeeeeeee.....eeeeeeeeeee.........ee...eee....eeeeeeeeeee..............eeeeeeeee..eeeeeeeeee....eeee...eeee..eee.eeeeee...hhhhh...hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh.eeeee............hhhhhh.............hhhhhhhhhhhhhhh....eeeeeeee.......hhhhhhhhhhhhhhhhh.....eeeeeehhhhh......hhhhhh...eeeee.hhhhhhhhhhhh....eeeeeee...............ee...hhhhh........ee.....hhhhhhhhhhhh..eeeeeee..................................hhhhhhhhhhhh.......eeee......hhhhhhh......eeeeeeee...eeeeee..eeeeeee.eeee.....eeee........eeeeee....eeeeeee.....eeeeeeee......eeeeee...eee.....eeeeeeeee............eeeeeeee.eeeeeee.................eeee....eeeeeeee....eeeeeeee......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cuc A 137 AVTNEEVNQMIEDRKVDFNQNWYFKLNANSKEAIKPDADVSTWKKLDLPYDWSIFNDFDHESPAQNEGGQLNGGEAWYRKTFKLDEKDLKKNVRLTFDGVYMDSQVYVNGQLVGHYPNGYNQFSYDITKYLQKDGRENVIAVHAVNKQPSSRWYSGSGIYRDVTLQVTDKVHVEKNGTTILTPKLEEQQHGKVETHVTSKIVNTDDKDHELVAEYQIVERGGHAVTGLVRTASRTLKAHESTSLDAILEVERPKLWTVLNDKPALYELITRVYRDGQLVDAKKDLFGYRYYHWTPNEGFSLNGERIKFHGVSLHHDHGALGAEENYKAEYRRLKQMKEMGVNSIRTTHNPASEQTLQIAAELGLLVQEEAFDTWYGGKKPYDYGRFFEKDATHPEARKGEKWSDFDLRTMVERGKNNPAIFMWSIGNEIGEANGDAHSLATVKRLVKVIKDVDKTRYVTMGADKFRFGNGSGGHEKIADELDAVGFNYSEDNYKALRAKHPKWLIYGSQTSSATRTRGSYYRPERELKHSNGPERNYEQSDYGNDRVGWGKTATASWTFDRDNAGYAGQFIWTGTDYIGEPTPWHNQNQTPVKSSYFGIVDTAGIPKHDFYLYQSQWVSVKKKPMVHLLPHWNWENKELASKVADSEGKIPVRAYSNASSVELFLNGKSLGLKTFNKKQTSDGRTYQEGANANELYLEWKVAYQPGTLEAIARDESGKEIARDKITTAGKPAAVRLIKEDHAIAADGKDLTYIYYEIVDSQGNVVPTANNLVRFQLHGQGQLVGVDNGEQASRERYKAQADGSWIRKAFNGKGVAIVKSTEQAGKFTLTAHSDLLKSNQVTVFTGKK 983
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856       866       876       886       896       906       916       926       936       946       956       966       976
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CUC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CUC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CUC)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4CUC)

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  4cuc
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A0A0H2UP19_S | A0A0H2UP19: 4cu6 4cu7 4cu8

(-) Related Entries Specified in the PDB File

4cu6 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu7 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu8 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cu9 UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cua UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA
4cub UNRAVELLING THE MULTIPLE FUNCTIONS OF THE ARCHITECTURALLY INTRICATE STREPTOCOCCUS PNEUMONIAE BETA-GALACTOSIDASE, BGAA