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(-) Description

Title :  SOLUTION STRUCTURE OF A TRKAIG2 DOMAIN CONSTRUCT FOR USE IN DRUG DISCOVERY
 
Authors :  D. K. Shoemark, M. Fahey, C. Williams, R. B. Sessions, M. P. Crump, S. J. A
Date :  28 Feb 14  (Deposition) - 14 Jan 15  (Release) - 27 Apr 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (25x)
NMR Structure *:  A  (1x)
Keywords :  Transferase, Trkaig2, Nmr Construct, Pain, Alzheimers (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Allen, J. J. Watson, D. K. Shoemark, N. U. Barua, N. K. Patel
Design And Nuclear Magnetic Resonance (Nmr) Structure Determination Of The Second Extracellular Immunoglobulin Tyrosine Kinase A (Trkaig2) Domain Construct For Binding Site Elucidation In Drug Discovery
J. Med. Chem. V. 58 767 2015
PubMed-ID: 25454499  |  Reference-DOI: 10.1021/JM501307E

(-) Compounds

Molecule 1 - HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET SYSTEM
    Fragment: EXTRACELLULAR NGF BINDING DOMAIN, RESIDUES 270-383
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: P285C, F367C INTRODUCED TO ADD A DISULPHIDE BOND TO IMPROVE PROTEIN STABILITY
    Synonym: NEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE 1, TRK1- TRANSFORMING TYROSINE KINASE PROTEIN, TROPOMYOSIN-RELATED KINASE A, TYROSINE KINASE RECEPTOR, TYROSINE KINASE RECEPTOR A, TRK-A, GP140TRK, P140-TRKA

 Structural Features

(-) Chains, Units

  1
NMR Structure (25x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4CRP)

(-) Sites  (0, 0)

(no "Site" information available for 4CRP)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:9 -A:91
2A:24 -A:69

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CRP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CRP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CRP)

(-) Exons   (0, 0)

(no "Exon" information available for 4CRP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee........eeeeeeee.....eeeeee..ee......eeeeee.......eeeeeeee.........eeeeeee....eeeeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 4crp A   1 DDDDDVSFCASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPCGQASASIMAAFMDNPF 107
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CRP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CRP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CRP)

(-) Gene Ontology  (88, 88)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NTRK1_HUMAN | P04629: 1he7 1shc 1wwa 1www 2ifg 2n90 4aoj 4f0i 4gt5 4pmm 4pmp 4pms 4pmt 4yne 4yps 5h3q 5jfs 5jfv 5jfw 5jfx 5kmi 5kmj 5kmk 5kml 5kmm 5kmn 5kmo

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4CRP)