4CQY - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE LSTA

Authors :   X. Xiong, H. Xiao, S. R. Martin, P. J. Coombs, J. Liu, P. J. Collins, S. G. V P. A. Walker, Y. P. Lin, J. W. Mccauley, S. J. Gamblin, J. J. Skehel

Date :   21 Feb 14 (Deposition) - 28 May 14 (Release) - 11 Jun 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Viral Protein, Sialic Acid, Glycoprotein, Virus Receptor, Avian Flu, Sialyllactosamine, 3Sln, 3'Sln, 6Sln, 6'Sln, Lsta (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Xiong, H. Xiao, S. R. Martin, P. J. Coombs, J. Liu, P. J. Collins, S. G. Vachieri, P. A. Walker, Y. P. Lin, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Enhanced Human Receptor Binding By H5 Haemagglutinins.
Virology V. 456 179 2014
PubMed-ID: 24889237 | Reference-DOI: 10.1016/J.VIROL.2014.03.008

Molecule 1 - HAEMAGGLUTININ HA1
	Chains	:	A, C, E
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PACGP67A
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-342
	Mutation	:	YES
	Organism Scientific	:	INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1))
	Organism Taxid	:	375457
	Variant	:	DEL133/ILE155THR MUTANT

Molecule 2 - HAEMAGGLUTININ HA2
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PACGP67A
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512
	Organism Scientific	:	INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1))
	Organism Taxid	:	375457
	Variant	:	DEL133/ILE155THR MUTANT

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 20)

No.	Name	Count	Type	Full Name
1	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
2	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION
4	SIA	3	Ligand/Ion	O-SIALIC ACID

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER C:121 , TRP C:122 , SER C:123 , ASP C:124 , HIS C:125 , ARG C:161	BINDING SITE FOR RESIDUE PO4 C1327
02	AC2	SOFTWARE	SER E:121 , TRP E:122 , SER E:123 , ASP E:124 , HIS E:125 , ARG E:161 , HOH E:2211	BINDING SITE FOR RESIDUE PO4 E1327
03	AC3	SOFTWARE	ASN A:11 , HOH A:2019 , HOH A:2285	BINDING SITE FOR MONO-SACCHARIDE NAG A1323 BOUND TO ASN A 11
04	AC4	SOFTWARE	ASN A:23 , HOH A:2287	BINDING SITE FOR MONO-SACCHARIDE NAG A1324 BOUND TO ASN A 23
05	AC5	SOFTWARE	ASN A:164 , ASN A:235 , ALA A:237 , HOH A:2289 , HOH A:2290 , HOH A:2291 , SER E:216	BINDING SITE FOR MONO-SACCHARIDE NAG A1325 BOUND TO ASN A 164
06	AC6	SOFTWARE	ASN A:72 , ASN C:11	BINDING SITE FOR MONO-SACCHARIDE NAG C1321 BOUND TO ASN C 11
07	AC7	SOFTWARE	ASN C:23 , HOH C:2356 , HOH C:2357 , HOH C:2358	BINDING SITE FOR MONO-SACCHARIDE NAG C1322 BOUND TO ASN C 23
08	AC8	SOFTWARE	SER A:216 , ASN C:164 , ASN C:235 , ALA C:237 , HOH C:2233 , HOH C:2234 , HOH C:2359	BINDING SITE FOR MONO-SACCHARIDE NAG C1323 BOUND TO ASN C 164
09	AC9	SOFTWARE	ASN E:11 , HOH E:2355	BINDING SITE FOR MONO-SACCHARIDE NAG E1321 BOUND TO ASN E 11
10	BC1	SOFTWARE	ASN E:23 , HOH E:2356 , HOH E:2357 , HOH E:2358	BINDING SITE FOR MONO-SACCHARIDE NAG E1322 BOUND TO ASN E 23
11	BC2	SOFTWARE	SER C:216 , ASN E:164 , ASN E:235 , ALA E:237 , HOH E:2359 , HOH E:2360 , HOH E:2363	BINDING SITE FOR MONO-SACCHARIDE NAG E1323 BOUND TO ASN E 164
12	BC3	SOFTWARE	TYR A:91 , VAL A:130 , SER A:131 , SER A:132 , TRP A:148 , HIS A:178 , ASN A:181 , GLU A:185 , LEU A:189 , GLN A:221 , HOH A:2106 , HOH A:2151 , HOH A:2187	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1326 THROUGH NAG A1328
13	BC4	SOFTWARE	ASN A:23 , TYR A:91 , VAL A:130 , SER A:131 , SER A:132 , TRP A:148 , ASN A:164 , HIS A:178 , ASN A:181 , GLU A:185 , LEU A:189 , GLN A:221 , ASN A:235 , ALA A:237 , HOH A:2106 , HOH A:2151 , HOH A:2187 , HOH A:2287 , HOH A:2289 , HOH A:2290 , HOH A:2291 , TYR C:91 , SER C:121 , TRP C:122 , SER C:123 , ASP C:124 , HIS C:125 , GLY C:129 , VAL C:130 , SER C:131 , SER C:132 , TRP C:148 , ARG C:161 , HIS C:178 , ASN C:181 , GLU C:185 , LEU C:189 , GLN C:221 , HOH C:2141 , HOH C:2188 , HOH C:2192 , HOH C:2253 , HOH C:2256 , HOH C:2287 , HOH C:2360 , HOH C:2361 , HOH C:2363 , HOH C:2364 , SER E:216	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C1324 THROUGH NAG C1326
14	BC5	SOFTWARE	TYR C:91 , GLY C:129 , VAL C:130 , SER C:131 , SER C:132 , TRP C:148 , HIS C:178 , ASN C:181 , GLU C:185 , LEU C:189 , GLN C:221 , HOH C:2141 , HOH C:2188 , HOH C:2192 , HOH C:2253 , HOH C:2256 , HOH C:2287 , HOH C:2360 , HOH C:2361 , HOH C:2363 , HOH C:2364 , TYR E:91 , GLY E:129 , VAL E:130 , SER E:131 , SER E:132 , TRP E:148 , HIS E:178 , ASN E:181 , GLU E:185 , LEU E:189 , GLN E:221 , HOH E:2138 , HOH E:2185 , HOH E:2186 , HOH E:2190 , HOH E:2238 , HOH E:2240 , HOH E:2364 , HOH E:2365 , HOH E:2366 , HOH E:2367 , HOH E:2368 , HOH E:2369	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E1324 THROUGH NAG E1326

Asymmetric/Biological Unit

No.	Residues
1	A:4	-	B:137
2	A:42	-	A:273
3	A:55	-	A:67
4	A:90	-	A:134
5	A:277	-	A:301
6	B:144	-	B:148
7	C:4	-	D:137
8	C:42	-	C:273
9	C:55	-	C:67
10	C:90	-	C:134
11	C:277	-	C:301
12	D:144	-	D:148
13	E:4	-	F:137
14	E:42	-	E:273
15	E:55	-	E:67
16	E:90	-	E:134
17	E:277	-	E:301
18	F:144	-	F:148

(no "Cis Peptide Bond" information available for 4CQY)

(no "SAP(SNP)/Variant" information available for 4CQY)

(no "PROSITE Motif" information available for 4CQY)

(no "Exon" information available for 4CQY)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:324
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:325
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334     
         Q207Z6_9INFA    15 KSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASAGVSSACPYQGRSSFFRNVVWLIKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSPQG 339
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh......-..eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..eee.....ee......ee...ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy A  -1 DPDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEAS-GVSSACPYQGRSSFFRNVVWLTKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSPQR 322
                                     8        18        28        38        48        58        68        78        88        98       108       118       128 |     137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317     
                                                                                                                                                           128 |                                                                                                                                                                                                 
                                                                                                                                                             129

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:163
                                   356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506   
         Q207Z6_9INFA   347 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS 509
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy B   1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:322
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:323
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334   
         Q207Z6_9INFA    15 KSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASAGVSSACPYQGRSSFFRNVVWLIKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSP 337
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh......-..eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..eee.....ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy C  -1 DPDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEAS-GVSSACPYQGRSSFFRNVVWLTKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSP 320
                                     8        18        28        38        48        58        68        78        88        98       108       118       128 |     137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317   
                                                                                                                                                           128 |                                                                                                                                                                                               
                                                                                                                                                             129

Chain D from PDB  Type:PROTEIN  Length:163
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:163
                                   356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506   
         Q207Z6_9INFA   347 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS 509
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy D   1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain E from PDB  Type:PROTEIN  Length:322
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:323
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334   
         Q207Z6_9INFA    15 KSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASAGVSSACPYQGRSSFFRNVVWLIKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSP 337
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh......-..eeeeee..eee....eee..........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..eee.....ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy E  -1 DPDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPANDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEAS-GVSSACPYQGRSSFFRNVVWLTKKDNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPENAYKIVKKGDSTIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSSRLVLATGLRNSP 320
                                     8        18        28        38        48        58        68        78        88        98       108       118       128 |     137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317   
                                                                                                                                                           128 |                                                                                                                                                                                               
                                                                                                                                                             129

Chain F from PDB  Type:PROTEIN  Length:164
 aligned with Q207Z6_9INFA | Q207Z6 from UniProtKB/TrEMBL  Length:568

    Alignment length:164
                                   356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506    
         Q207Z6_9INFA   347 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYSE 510
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee....eeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhhh..hhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cqy F   1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYSE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CQY)

(no "CATH Domain" information available for 4CQY)

(no "Pfam Domain" information available for 4CQY)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q207Z6_9INFA | Q207Z6)

molecular function
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0019065	receptor-mediated endocytosis of virus by host cell	Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		GAL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SIA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
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	4cqy
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	Q207Z6_9INFA \| Q207Z6	:	4bgz 4bh0 4bh1 4cqv 4cqw 4cqx

4cqp	CRYSTAL STRUCTURE OF H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ
4cqq	H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE 3'SLN
4cqr	H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
4cqs	H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE 3'SLN
4cqt	H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE 3'SLN
4cqu	H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
4cqv	CRYSTAL STRUCTURE OF H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ
4cqw	H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE 3'SLN
4cqx	H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
4cqz	CRYSTAL STRUCTURE OF H5 (VN1194) GLN196ARG MUTANT HAEMAGGLUTININ
4cr0	CRYSTAL STRUCTURE OF H5 (VN1194) ASN186LYS/GLY143ARG MUTANT HAEMAGGLUTININ

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 20)

Sites (14, 14)

SS Bonds (18, 18)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File