4CMW - JenaLib

Title :   CRYSTAL STRUCTURE OF RV3378C

Authors :   E. Layre, H. J. Lee, D. C. Young, A. J. Martinot, J. Buter, A. J. Minnaard, J. W. Annand, S. M. Fortune, B. B. Snider, I. Matsunaga, E. J. Rubin, T. A D. B. Moody

Date :   18 Jan 14 (Deposition) - 19 Feb 14 (Release) - 12 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.21

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hydrolase, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Layre, H. J. Lee, D. C. Young, A. Jezek Martinot, J. Buter, A. J. Minnaard, J. W. Annand, S. M. Fortune, B. B. Snider, I. Matsunaga, E. J. Rubin, T. Alber, D. B. Moody
Molecular Profiling Of Mycobacterium Tuberculosis Identifies Tuberculosinyl Nucleoside Products Of The Virulence-Associated Enzyme Rv3378C.
Proc. Natl. Acad. Sci. Usa V. 111 2978 2014
PubMed-ID: 24516143 | Reference-DOI: 10.1073/PNAS.1315883111

Compounds

Molecule 1 - DITERPENE SYNTHASE
	Chains	:	A, B
	EC Number	:	3.1.7.9, 3.1.7.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	ISOTUBERCULOSINOL SYNTHASE, NOSYBERKOL SYNTHASE, TUBERCULOSINOL SYNTHASE, RV3378C

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:119 , PHE A:120 , TYR A:124 , THR A:145 , TYR A:194 , GLY A:195 , HOH A:2075 , HOH A:2159	BINDING SITE FOR RESIDUE EDO A1297
2	AC2	SOFTWARE	GLY A:221 , SER A:224 , ARG A:251 , HIS A:252 , HOH A:2132 , ARG B:209 , SER B:211	BINDING SITE FOR RESIDUE EDO A1298
3	AC3	SOFTWARE	ARG A:38 , PHE A:207 , GLY A:208 , ARG A:209 , TRP A:292 , CIT A:1300 , HOH A:2134	BINDING SITE FOR RESIDUE PEG A1299
4	AC4	SOFTWARE	SER A:220 , GLY A:221 , HOH A:2116 , SER B:80 , ASN B:163 , PHE B:213 , ASP B:214 , HOH B:2134 , HOH B:2152	BINDING SITE FOR RESIDUE EDO B1297
5	AC5	SOFTWARE	THR A:212 , PHE A:215 , SER A:219 , HOH A:2124 , HOH A:2125 , ASP B:214 , PHE B:215 , PRO B:216 , SER B:219 , HOH B:2135	BINDING SITE FOR RESIDUE PEG B1298
6	AC6	SOFTWARE	GLY A:35 , THR A:36 , ARG A:37 , ARG A:38 , PEG A:1299 , LYS B:256 , PRO B:257 , TYR B:259	BINDING SITE FOR RESIDUE CIT A1300

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:288
 aligned with TUBOL_MYCTO | P9WJ60 from UniProtKB/Swiss-Prot  Length:296

    Alignment length:295
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
          TUBOL_MYCTO     2 NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeee....-------....hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh..hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......eeeee................eeeee..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...ee..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cmw A   2 NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDL-------IVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
                                    11        21        31        41        51        61        71        81 |      91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
                                                                                                            83      91

Chain A from PDB  Type:PROTEIN  Length:288
 aligned with TUBOL_MYCTU | P9WJ61 from UniProtKB/Swiss-Prot  Length:296

    Alignment length:295
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
          TUBOL_MYCTU     2 NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeee....-------....hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh..hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......eeeee................eeeee..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...ee..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cmw A   2 NLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDL-------IVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
                                    11        21        31        41        51        61        71        81 |      91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291     
                                                                                                            83      91

Chain B from PDB  Type:PROTEIN  Length:286
 aligned with TUBOL_MYCTO | P9WJ60 from UniProtKB/Swiss-Prot  Length:296

    Alignment length:294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
          TUBOL_MYCTO     3 LVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeee.------...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh..hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......eeeee................eeeee..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh--..ee..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cmw B   3 LVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFS------GDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRA--DRVFGVGCVHDGIWFAEG 296
                                    12        22        32        42        52        62        72       | -    |   92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   |  |282       292    
                                                                                                        80     87                                                                                                                                                                                          276  |                 
                                                                                                                                                                                                                                                                                                              279

Chain B from PDB  Type:PROTEIN  Length:286
 aligned with TUBOL_MYCTU | P9WJ61 from UniProtKB/Swiss-Prot  Length:296

    Alignment length:294
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292    
          TUBOL_MYCTU     3 LVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG 296
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeee.------...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhh..hhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......eeeee................eeeee..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh--..ee..eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cmw B   3 LVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFS------GDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRA--DRVFGVGCVHDGIWFAEG 296
                                    12        22        32        42        52        62        72       | -    |   92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272   |  |282       292    
                                                                                                        80     87                                                                                                                                                                                          276  |                 
                                                                                                                                                                                                                                                                                                              279

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 8)

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Description