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(-) Description

Title :  CRYSTAL STRUCTURE OF VEGFR-1 DOMAIN 2 IN PRESENCE OF ZN
 
Authors :  J. -F. Gaucher, M. Reille-Seroussi, N. Gagey-Eilstein, S. Broussy, P. B. Seijo, M. -B. Lascombe, B. Gautier, W. -Q. Liu, F. Huguenot, N. Ingui S. Bouaziz, M. Vidal, I. Broutin
Date :  09 Jan 14  (Deposition) - 28 Jan 15  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (2x)
Keywords :  Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. -F. Gaucher, M. Reille-Seroussi, N. Gagey-Eilstein, S. Broussy, P. Coric, B. Seijo, M. -B. Lascombe, B. Gautier, W. -Q. Liu, F. Huguenot N. Inguimbert, S. Bouaziz, M. Vidal, I. Broutin
Biophysical Studies Of The Induced Dimerization Of Human Vegf R Receptor 1 Binding Domain By Divalent Metals Competing With Vegf-A
Plos One V. 11 67755 2016
PubMed-ID: 27942001  |  Reference-DOI: 10.1371/JOURNAL.PONE.0167755

(-) Compounds

Molecule 1 - VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 1
    Chains: X
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA-GAMI PLYSS
    Expression System Vector: PET22
    Expression System Vector Type: PLASMID
    Fragment: DOMAIN-2, RESIDUES 132-225
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: VEGFR-1, FMS-LIKE TYROSINE KINASE 1, FLT-1, TYROSINE-PROTEIN KINASE FRT, TYROSINE-PROTEIN KINASE RECEPTOR FLT, FLT, VASCULAR PERMEABILITY FACTOR RECEPTOR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL
2ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS X:147 , HIS X:223BINDING SITE FOR RESIDUE ZN X1226
2AC2SOFTWAREPRO X:179 , ASP X:180 , THR X:210 , ASN X:212 , GLY X:213 , EDO X:1230BINDING SITE FOR RESIDUE EDO X1227
3AC3SOFTWARETHR X:161 , THR X:166 , THR X:210 , HOH X:2034 , HOH X:2042BINDING SITE FOR RESIDUE EDO X1228
4AC4SOFTWAREARG X:152 , GLU X:153BINDING SITE FOR RESIDUE EDO X1229
5AC5SOFTWAREASN X:164 , ILE X:165 , THR X:166 , ILE X:178 , THR X:210 , EDO X:1227 , HOH X:2056BINDING SITE FOR RESIDUE EDO X1230

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1X:158 -X:207

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe X:172 -Pro X:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CKV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CKV)

(-) Exons   (0, 0)

(no "Exon" information available for 4CKV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee.....eee..........eeeee...eee......eeee...eeee...hhhhheeeeeeeee..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4ckv X 132 GRPFVEMYSEIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTNYLTHRQ 225
                                   141       151       161       171       181       191       201       211       221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CKV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CKV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CKV)

(-) Gene Ontology  (54, 54)

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  4ckv
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  VGFR1_HUMAN | P17948
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VGFR1_HUMAN | P17948: 1flt 1qsv 1qsz 1qty 1rv6 2xac 3hng 4cl7 5abd 5ex3 5t89

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4CKV)