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(-) Description

Title :  CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS TRIMERIC AUTOTRANSPORTER AND VACCINE ANTIGEN NADA
 
Authors :  E. Malito, M. Biancucci, G. Spraggon, M. J. Bottomley
Date :  19 Dec 13  (Deposition) - 26 Nov 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Cell Adhesion, Trimeric Auto-Transporter (Taa), Coiled-Coil (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Malito, M. Biancucci, A. Faleri, I. Ferlenghi, M. Scarselli, G. Maruggi, P. Lo Surdo, D. Veggi, A. Liguori, L. Santini, I. Bertoldi R. Petracca, S. Marchi, G. Romagnoli, E. Cartocci, I. Vercellino, S. Savino, G. Spraggon, N. Norais, M. Pizza, R. Rappuoli, V. Masignani M. J. Bottomley
Structure Of The Meningococcal Vaccine Antigen Nada And Epitope Mapping Of A Bactericidal Antibody.
Proc. Natl. Acad. Sci. Usa V. 111 17128 2014
PubMed-ID: 25404323  |  Reference-DOI: 10.1073/PNAS.1419686111

(-) Compounds

Molecule 1 - NADA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET21B
    Expression System Vector Type: PLASMID
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Strain: M01-240320
    Synonym: ADHESIN A
    Variant: VARIANT 5

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1IOD4Ligand/IonIODIDE ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1IOD12Ligand/IonIODIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:44BINDING SITE FOR RESIDUE IOD A1001
2AC2SOFTWAREASN A:106BINDING SITE FOR RESIDUE IOD A1002

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:123
 aligned with A0ELI2_NEIME | A0ELI2 from UniProtKB/TrEMBL  Length:325

    Alignment length:185
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206     
         A0ELI2_NEIME    27 PPSTDEIAKAALVNSYNNTQDINGFKVGDTIYDINGNGKITRKTATEDDVKADDFGGLGLKEVLAQHDQSLADLTGTVDENSEALVKTAEVVNDISADVKANTAAIGENKAAIAKKADQTALDAVSEKVTANETAIGKKANSADVYTKAEVYTKQESDNRFVKIGDRIGNLNTTANGLETRLADA 211
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.....eeeeee-..eeeeee.hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-------------------------------------------------------------hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cjd A  27 PPSTDEIAKAALVGVYNNTQDINGFKVGDTIYDIE-NGQPKGRPATEDDVKADDFGGLGLKEVLAQHDQSLADLTGTVEENSEALVKTAEVVNDISADVKANTAAIRENKAA-------------------------------------------------------------TANGLETRLADA 210
                                    36        46        56    | | 65        75        85        95       105       115       125       135 |       -         -         -         -         -         -   |   205     
                                                             61 |                                                                        137                                                           199           
                                                               62
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 Classification and Annotation

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  4cjd
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