4C9J - JenaLib

Title :   STRUCTURE OF YEAST MITOCHONDRIAL ADP/ATP CARRIER ISOFORM 3 INHIBITED BY CARBOXYATRACTYLOSIDE (P212121 CRYSTAL FORM)

Authors :   J. J. Ruprecht, A. M. Hellawell, M. Harding, P. G. Crichton, A. J. Mccoy, E. R. S. Kunji

Date :   02 Oct 13 (Deposition) - 22 Jan 14 (Release) - 12 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Mitochondrial Carrier, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Ruprecht, A. M. Hellawell, M. Harding, P. G. Crichton, A. J. Mccoy E. R. S. Kunji
Structures Of Yeast Mitochondrial Adp/Atp Carriers Support A Domain-Based Alternating-Access Transport Mechanism
Proc. Natl. Acad. Sci. Usa V. 111 E426 2014
PubMed-ID: 24474793 | Reference-DOI: 10.1073/PNAS.1320692111

Compounds

Molecule 1 - ADP, ATP CARRIER PROTEIN 3
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SACCHAROMYCES CEREVISIAE
	Expression System Common	:	BAKER'S YEAST
	Expression System Strain	:	WB12
	Expression System Taxid	:	4932
	Expression System Vector	:	PYES3
	Expression System Vector Type	:	PLASMID
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Synonym	:	ADP-ATP CARRIER ISOFORM 3, ADP/ATP TRANSLOCASE 3, ADENINE NUCLEOTIDE TRANSLOCATOR 3, ANT 3

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 8)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	CDL	6	Ligand/Ion	CARDIOLIPIN
2	CXT	2	Ligand/Ion	CARBOXYATRACTYLOSIDE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CDL	3	Ligand/Ion	CARDIOLIPIN
2	CXT	1	Ligand/Ion	CARBOXYATRACTYLOSIDE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CDL	3	Ligand/Ion	CARDIOLIPIN
2	CXT	1	Ligand/Ion	CARBOXYATRACTYLOSIDE

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:85 , ASN A:93 , LYS A:97 , GLY A:188 , ARG A:193 , SER A:234 , ASP A:238 , ARG A:241	BINDING SITE FOR RESIDUE CXT A 401
2	AC2	SOFTWARE	TRP A:76 , ARG A:77 , GLY A:78 , ASN A:79 , THR A:80 , LEU A:162 , THR A:163 , CDL A:801 , LEU B:72 , ILE B:73 , CDL B:800	BINDING SITE FOR RESIDUE CDL A 800
3	AC3	SOFTWARE	ILE A:40 , GLY A:58 , ILE A:59 , VAL A:60 , LYS A:167 , LEU A:170 , PHE A:274 , GLY A:276 , GLY A:278 , ILE A:281 , LEU A:282 , CDL A:800	BINDING SITE FOR RESIDUE CDL A 801
4	AC4	SOFTWARE	ILE A:175 , ALA A:176 , TYR A:179 , GLY A:181 , PHE A:182 , MET A:183 , VAL A:187 , LEU A:237 , MET A:244 , GLY A:256 , ALA A:257 , ILE A:258 , PHE B:116	BINDING SITE FOR RESIDUE CDL A 802
5	AC5	SOFTWARE	ARG B:85 , ASN B:93 , LYS B:97 , SER B:130 , GLY B:188 , ARG B:193 , SER B:234 , ASP B:238 , ARG B:241	BINDING SITE FOR RESIDUE CXT B 401
6	AC6	SOFTWARE	LEU A:72 , CDL A:800 , TRP B:76 , ARG B:77 , GLY B:78 , ASN B:79 , THR B:80 , GLY B:161 , LEU B:162 , THR B:163	BINDING SITE FOR RESIDUE CDL B 800
7	AC7	SOFTWARE	SER B:57 , GLY B:58 , ILE B:59 , VAL B:60 , LYS B:167 , PHE B:274 , GLY B:276 , CYS B:277 , GLY B:278 , ALA B:279 , ILE B:281	BINDING SITE FOR RESIDUE CDL B 801
8	AC8	SOFTWARE	LEU B:132 , ILE B:175 , ALA B:176 , TYR B:179 , GLY B:181 , PHE B:182 , MET B:183 , PRO B:184 , LEU B:237 , GLY B:256 , ALA B:257 , ILE B:258	BINDING SITE FOR RESIDUE CDL B 802

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 5)

Asymmetric Unit (1, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SOLCAR	PS50920	Solute carrier (Solcar) repeat profile.	ADT3_YEAST	10-103 114-206 214-300	5	A:10-103 A:114-204 B:115-203 A:220-300 B:220-300

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SOLCAR	PS50920	Solute carrier (Solcar) repeat profile.	ADT3_YEAST	10-103 114-206 214-300	3	A:10-103 A:114-204 - A:220-300 -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SOLCAR	PS50920	Solute carrier (Solcar) repeat profile.	ADT3_YEAST	10-103 114-206 214-300	2	- - B:115-203 - B:220-300

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:277
 aligned with ADT3_YEAST | P18238 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:297
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       
           ADT3_YEAST    10 TNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKSSKKGGARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPLVLTGSLDGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKF 306
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-----.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.---------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SOLCAR  PDB: A:10-103 UniProt: 10-103                                                         ----------SOLCAR  PDB: A:114-204 UniProt: 114-206                                                      -------SOLCAR  PDB: A:220-300 UniProt: 214-300                                                ------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c9j A  10 TNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK---------------FLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKF 306
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149|     |159       169       179       189       199    |    -         -|      229       239       249       259       269       279       289       299       
                                                                                                                                                                      150   156                                             204             220

Chain B from PDB  Type:PROTEIN  Length:267
 aligned with ADT3_YEAST | P18238 from UniProtKB/Swiss-Prot  Length:307

    Alignment length:296
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301      
           ADT3_YEAST    12 FAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKSSKKGGARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPLVLTGSLDGSFLASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKFK 307
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....----.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh----------------.hhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE SOLCAR  PDB: - UniProt: 10-103                                                              ----------SOLCAR  PDB: B:115-203 UniProt: 114-206                                                      -------SOLCAR  PDB: B:220-300 UniProt: 214-300                                                ------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c9j B  12 FAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFG---------WFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKSS----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSL----------------FLLGWVVTTGASTCSYPLDTVRRRMMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKFK 307
                                    21        31        41        51        61        71        81        91       101   |     -   |   121       131       141       151    |  161       171       181       191       201 |       -       221       231       241       251       261       271       281       291       301      
                                                                                                                       105       115                                 151  156                                            203              220

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4c9g	STRUCTURE OF YEAST MITOCHONDRIAL ADP-ATP CARRIER ISOFORM 2 INHIBITED BY CARBOXYATRACTYLOSIDE (C2221 CRYSTAL FORM)
4c9h	STRUCTURE OF YEAST MITOCHONDRIAL ADP-ATP CARRIER ISOFORM 2 INHIBITED BY CARBOXYATRACTYLOSIDE (P212121 CRYSTAL FORM)
4c9q	STRUCTURE OF YEAST MITOCHONDRIAL ADP-ATP CARRIER ISOFORM 3 INHIBITED BY CARBOXYATRACTYLOSIDE (P21 CRYSTAL FORM)

Description