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(-) Description

Title :  CAS6 (TTHA0078) PRODUCT COMPLEX
 
Authors :  M. Jinek, O. Niewoehner, J. A. Doudna
Date :  02 Oct 13  (Deposition) - 06 Nov 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Hydrolase-Rna Complex, Crispr Cas Protein, Rna Processing Ribonuclease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Niewoehner, M. Jinek, J. A. Doudna
Evolution Of Crispr Rna Recognition And Processing By Cas6 Endonucleases.
Nucleic Acids Res. V. 42 1341 2014
PubMed-ID: 24150936  |  Reference-DOI: 10.1093/NAR/GKT922

(-) Compounds

Molecule 1 - CAS6A
    Atcc: 27634
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEC-K-MBP
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: ROSETTA 2
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
 
Molecule 2 - R1 REPEAT RNA CLEAVAGE PRODUCT
    Atcc: 27634
    Chains: C
    Fragment: REPEAT STEM-LOOP
    Organism Scientific: THERMUS THERMOPHILUS HB8
    Organism Taxid: 300852
    Other Details: R1 REPEAT RNA CLEAVAGE PRODUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
123G1Mod. NucleotideGUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2K1Ligand/IonPOTASSIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:56 , TRP A:100 , ARG A:121 , ARG A:233 , HOH A:2016BINDING SITE FOR RESIDUE SO4 A1239
2AC2SOFTWARETRP B:56 , TRP B:100 , ARG B:233 , HOH B:2023 , HOH B:2041 , HOH B:2060BINDING SITE FOR RESIDUE SO4 B1239
3AC3SOFTWARETYR A:26 , VAL A:36 , HIS A:37 , GLN A:39 , ASN A:42 , G C:27BINDING SITE FOR RESIDUE K A1240

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C8Z)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:112 -Pro A:113
2Gly B:112 -Pro B:113

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C8Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4C8Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4C8Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
 aligned with Q5SM65_THET8 | Q5SM65 from UniProtKB/TrEMBL  Length:239

    Alignment length:238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
         Q5SM65_THET8     1 MVLAALVLVLEGEGLPEPLGLRGFFYGLLREVAPEVHDQGENPFALGFGGREGAAWARVSLLVEGLYARLAPRLYALEGEEVRLGPPFRVRAVLQEGHPWAGVSTYPRLFQGPPSRDLALRFASPTFFRRKGVHYPVPEPRLVLESLLRRLEAFGPLKAPEGVREALLERTTVRSLEGRTLPARTEVDTAGFVGRVVYHLPRATEEEALWLSALGRFAFYSGVGAKTSLGYGRARAES 238
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.....hhhhhhhhhhhhhhhhh..........eeeeee.....eeeeeee.hhhhhhhhhhhhhhh...eee...eeeeeeee.......eeeehhhhh......eeeeeeeeee.eee..eee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eeeeeeeeeeeee...eeeeeeeeeeee....hhhhhhhhhhhhhhhhhhh...hhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8z A   1 MVLAALVLVLEGEGLPEPLGLRGFFYGLLREVAPEVHDQGENPFALGFGGREGAAWARVSLLVEGLYARLAPRLYALEGEEVRLGPPFRVRAVLQEGHPWAGVSTYPRLFQGPPSRDLALRFASPTFFRRKGVHYPVPEPRLVLESLLRRLEAFGPLKAPEGVREALLERTTVRSLEGRTLPARTEVDTAGFVGRVVYHLPRATEEEALWLSALGRFAFYSGVGAKTSLGYGRARAES 238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with Q5SM65_THET8 | Q5SM65 from UniProtKB/TrEMBL  Length:239

    Alignment length:238
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
         Q5SM65_THET8     1 MVLAALVLVLEGEGLPEPLGLRGFFYGLLREVAPEVHDQGENPFALGFGGREGAAWARVSLLVEGLYARLAPRLYALEGEEVRLGPPFRVRAVLQEGHPWAGVSTYPRLFQGPPSRDLALRFASPTFFRRKGVHYPVPEPRLVLESLLRRLEAFGPLKAPEGVREALLERTTVRSLEGRTLPARTEVDTAGFVGRVVYHLPRATEEEALWLSALGRFAFYSGVGAKTSLGYGRARAES 238
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.....hhhhhhhhhhhhhhhhh-------...eeeeeeee..eeeeeeee.hhhhhhhhhhhhhh....eee...eeeeeeee.......eeee.hhhhh.....eeeeeeeeee.ee....ee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhh.eeeeeeeeeee.......eeeeeeeeee....hhhhhhhhhhhhhhhhhhh...hhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8z B   1 MVLAALVLVLEGEGLPEPLGLRGFFYGLLREVA-------ENPFALGFGGREGAAWARVSLLVEGLYARLAPRLYALEGEEVRLGPPFRVRAVLQEGHPWAGVSTYPRLFQGPPSRDLALRFASPTFFRRKGVHYPVPEPRLVLESLLRRLEAFGPLKAPEGVREALLERTTVRSLEGRTLPARTEVDTAGFVGRVVYHLPRATEEEALWLSALGRFAFYSGVGAKTSLGYGRARAES 238
                                    10        20        30  |      -|       50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        
                                                           33      41                                                                                                                                                                                                     


Chain C from PDB  Type:DNA/RNA  Length:15
                                               
                 4c8z C  14 AAGCCCCGUAAGGGg  28
                                    23    |
                                         28-23G
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C8Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C8Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C8Z)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q5SM65_THET8 | Q5SM65)
molecular function
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.

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  Cis Peptide Bonds
    Gly A:112 - Pro A:113   [ RasMol ]  
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  4c8z
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SM65_THET8 | Q5SM65: 4c8y 4c97

(-) Related Entries Specified in the PDB File

4c8y CAS6 (TTHA0078) SUBSTRATE MIMIC COMPLEX
4c97 CAS6 (TTHA0078) H37A MUTANT
4c98 THERMUS THERMOPHILUS CAS6 (TTHB231)
4c9d CAS6 (TTHB231) PRODUCT COMPLEX