4C75 - JenaLib

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Title :   CONSENSUS (ALL-CON) BETA-LACTAMASE CLASS A

Authors :   J. A. Gavira, V. A. Risso, J. M. Sanchez-Ruiz

Date :   19 Sep 13 (Deposition) - 16 Apr 14 (Release) - 28 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Hydrolase, Antibiotic Resistance (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. A. Risso, J. A. Gavira, E. A. Gaucher, J. M. Sanchez-Ruiz
Phenotypic Comparisons Of Consensus Variants Versus Laboratory Resurrections Of Precambrian Proteins.
Proteins V. 82 887 2014
PubMed-ID: 24710963 | Reference-DOI: 10.1002/PROT.24575
(for further references see the PDB file header)

Molecule 1 - BETA-LACTAMASE
	Chains	:	A, B, C, D
	EC Number	:	3.5.2.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET24
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SYNTHETIC CONSTRUCT
	Organism Taxid	:	32630
	Other Details	:	RESURRECTED SEQUENCE, ANCESTRAL RECONSTRUCTED

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 16)

No.	Name	Count	Type	Full Name
1	ACT	7	Ligand/Ion	ACETATE ION
2	NA	1	Ligand/Ion	SODIUM ION
3	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	NA	-1	Ligand/Ion	SODIUM ION
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:70 , SER A:130 , LYS A:234 , THR A:235 , GLY A:236 , THR A:237 , ARG A:244 , NA A:294 , HOH A:2068 , HOH A:2099	BINDING SITE FOR RESIDUE SO4 A 291
02	AC2	SOFTWARE	VAL A:108 , LYS A:111 , TYR A:129	BINDING SITE FOR RESIDUE ACT A 292
03	AC3	SOFTWARE	ALA A:150 , ARG A:153 , SER A:154 , ACT D:293	BINDING SITE FOR RESIDUE PEG A 293
04	AC4	SOFTWARE	SER A:70 , GLY A:236 , THR A:237 , SO4 A:291	BINDING SITE FOR RESIDUE NA A 294
05	AC5	SOFTWARE	ILE A:285 , GLU A:288 , HOH A:2223 , HOH A:2230	BINDING SITE FOR RESIDUE PEG A 295
06	AC6	SOFTWARE	SER B:70 , SER B:130 , LYS B:234 , THR B:235 , GLY B:236 , THR B:237 , ARG B:244	BINDING SITE FOR RESIDUE SO4 B 291
07	AC7	SOFTWARE	PRO B:107 , VAL B:108 , LYS B:111 , TYR B:129	BINDING SITE FOR RESIDUE PEG B 292
08	AC8	SOFTWARE	ARG B:164 , ARG B:178 , TRP C:165	BINDING SITE FOR RESIDUE ACT B 293
09	AC9	SOFTWARE	LEU A:173 , PRO A:174 , TYR A:241 , HOH A:2145 , THR B:51 , ARG B:191 , LEU B:195	BINDING SITE FOR RESIDUE ACT B 294
10	BC1	SOFTWARE	ARG A:43 , ARG A:61 , GLU A:64 , PRO B:201 , ALA B:202 , ALA B:205 , HOH B:2196	BINDING SITE FOR RESIDUE PEG B 295
11	BC2	SOFTWARE	SER C:70 , SER C:130 , THR C:235 , GLY C:236 , THR C:237 , ARG C:244 , HOH C:2053	BINDING SITE FOR RESIDUE SO4 C 291
12	BC3	SOFTWARE	ASN C:30 , ARG C:61	BINDING SITE FOR RESIDUE ACT C 292
13	BC4	SOFTWARE	SER D:70 , SER D:130 , THR D:235 , GLY D:236 , THR D:237 , ARG D:244 , HOH D:2039	BINDING SITE FOR RESIDUE SO4 D 291
14	BC5	SOFTWARE	GLU D:281 , LYS D:284 , GLU D:288	BINDING SITE FOR RESIDUE ACT D 292
15	BC6	SOFTWARE	ARG A:153 , GLY A:156 , PEG A:293 , ASP D:63	BINDING SITE FOR RESIDUE ACT D 293
16	BC7	SOFTWARE	THR D:215 , THR D:216 , GLY D:217 , ASP D:218 , HOH D:2073	BINDING SITE FOR RESIDUE ACT D 294

(no "SS Bond" information available for 4C75)

Asymmetric Unit

No.	Residues
1	Glu A:166	-	Pro A:167
2	Glu B:166	-	Pro B:167
3	Glu C:166	-	Pro C:167
4	Glu D:166	-	Pro D:167

(no "SAP(SNP)/Variant" information available for 4C75)

(no "PROSITE Motif" information available for 4C75)

(no "Exon" information available for 4C75)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhh.......ee............hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c75 A  26 AAALNDEFAALEKQYGGRLGVYALDTGTGRTIAYRADERFPMCSTFKALAAAAVLAQVDAGKESLDRRITYTKDDLVDYSPVTEKHVGTGMTLAELCEAAITYSDNTAANLLLDEIGGPKGLTAFLRSIGDDVTRLDRWEPELNEALPGDPRDTTTPAAMAATLRALLLGDALSPASRAQLTDWMRGNTTGDKLIRAGLPAGWRVGDKTGTGSYGTRNDIAIIWPPNRAPIVLAIYSTGSTADAKERNALIAEAAKIVAEAL 290
                                    35        45        55  ||    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288  
                                                           58|                                                                                                                                                                               238|         252|                                    
                                                            60                                                                                                                                                                                240          254

Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c75 B  26 AAALNDEFAALEKQYGGRLGVYALDTGTGRTIAYRADERFPMCSTFKALAAAAVLAQVDAGKESLDRRITYTKDDLVDYSPVTEKHVGTGMTLAELCEAAITYSDNTAANLLLDEIGGPKGLTAFLRSIGDDVTRLDRWEPELNEALPGDPRDTTTPAAMAATLRALLLGDALSPASRAQLTDWMRGNTTGDKLIRAGLPAGWRVGDKTGTGSYGTRNDIAIIWPPNRAPIVLAIYSTGSTADAKERNALIAEAAKIVAEAL 290
                                    35        45        55  ||    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288  
                                                           58|                                                                                                                                                                               238|         252|                                    
                                                            60                                                                                                                                                                                240          254

Chain C from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c75 C  26 AAALNDEFAALEKQYGGRLGVYALDTGTGRTIAYRADERFPMCSTFKALAAAAVLAQVDAGKESLDRRITYTKDDLVDYSPVTEKHVGTGMTLAELCEAAITYSDNTAANLLLDEIGGPKGLTAFLRSIGDDVTRLDRWEPELNEALPGDPRDTTTPAAMAATLRALLLGDALSPASRAQLTDWMRGNTTGDKLIRAGLPAGWRVGDKTGTGSYGTRNDIAIIWPPNRAPIVLAIYSTGSTADAKERNALIAEAAKIVAEAL 290
                                    35        45        55  ||    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288  
                                                           58|                                                                                                                                                                               238|         252|                                    
                                                            60                                                                                                                                                                                240          254

Chain D from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhh.......ee............hhhhh....eehhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhh...........hhhhhh.......eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c75 D  26 AAALNDEFAALEKQYGGRLGVYALDTGTGRTIAYRADERFPMCSTFKALAAAAVLAQVDAGKESLDRRITYTKDDLVDYSPVTEKHVGTGMTLAELCEAAITYSDNTAANLLLDEIGGPKGLTAFLRSIGDDVTRLDRWEPELNEALPGDPRDTTTPAAMAATLRALLLGDALSPASRAQLTDWMRGNTTGDKLIRAGLPAGWRVGDKTGTGSYGTRNDIAIIWPPNRAPIVLAIYSTGSTADAKERNALIAEAAKIVAEAL 290
                                    35        45        55  ||    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 ||    247    || 258       268       278       288  
                                                           58|                                                                                                                                                                               238|         252|                                    
                                                            60                                                                                                                                                                                240          254

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4C75)

(no "CATH Domain" information available for 4C75)

(no "Pfam Domain" information available for 4C75)

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	Cis Peptide Bonds
		Glu A:166 - Pro A:167	[ RasMol ]
		Glu B:166 - Pro B:167	[ RasMol ]
		Glu C:166 - Pro C:167	[ RasMol ]
		Glu D:166 - Pro D:167	[ RasMol ]

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	4c75
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4c6y	ANCESTRAL PNCA (LAST COMMON ANCESTORS OF GRAM-POSITIVE AND GRAM-NEGATIVE BACTERIA) BETA-LACTAMASE CLASS A

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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