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(-) Description

Title :  CRYSTAL STRUCTURE OF HIGH-AFFINITY VON WILLEBRAND FACTOR A1 DOMAIN WITH DISULFIDE MUTATION IN COMPLEX WITH HIGH AFFINITY GPIB ALPHA
 
Authors :  M. A. Blenner, X. Dong, T. A. Springer
Date :  16 Aug 13  (Deposition) - 08 Jan 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Blenner, X. Dong, T. A. Springer
Towards The Structural Basis Of Regulation Of Von Willebrand Factor Binding To Glycoprotein Ib
J. Biol. Chem. V. 289 5565 2014
PubMed-ID: 24391089  |  Reference-DOI: 10.1074/JBC.M113.511220

(-) Compounds

Molecule 1 - VON WILLEBRAND FACTOR
    ChainsA, C, E, G
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET21
    Expression System Vector TypePLASMID
    Fragment1264-1468
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHIGH AFFINITY MUTANT OF A1
    SynonymVWF, VON WILLEBRAND ANTIGEN II, VON WILLEBRAND FACTOR A1
 
Molecule 2 - PLATELET GLYCOPROTEIN IB ALPHA CHAIN
    ChainsB, D, F, H
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK-293T
    Expression System CommonHUMAN
    Expression System PlasmidET-6
    Expression System Taxid9606
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsHIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS.
    SynonymGP-IB ALPHA, GPIB-ALPHA, GPIBA, GLYCOPROTEIN IBALPHA, ANTIGEN CD42B-ALPHA

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3SO410Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
3SO42Ligand/IonSULFATE ION
Biological Unit 4 (2, 5)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
3SO44Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU C:1427 , LYS C:1430 , LYS H:19 , ARG H:21BINDING SITE FOR RESIDUE SO4 H1266
02AC2SOFTWAREARG G:1336 , PRO G:1337 , SER G:1338 , ARG G:1341BINDING SITE FOR RESIDUE SO4 G2466
03AC3SOFTWAREPRO B:188 , ARG C:1336 , PRO C:1337 , SER C:1338BINDING SITE FOR RESIDUE SO4 C2467
04AC4SOFTWAREARG E:1336 , PRO E:1337 , SER E:1338 , HOH E:2005 , PRO H:188BINDING SITE FOR RESIDUE SO4 E2466
05AC5SOFTWAREPRO B:141 , GLY B:142 , PRO B:164 , GLY B:166 , SER C:1338 , ARG C:1342BINDING SITE FOR RESIDUE SO4 B1266
06AC6SOFTWARESER E:1338 , PRO H:141 , GLY H:142 , PRO H:164 , ALA H:165 , GLY H:166BINDING SITE FOR RESIDUE SO4 H1267
07AC7SOFTWARESER A:1338 , ARG A:1342 , PRO D:141 , ALA D:165 , GLY D:166BINDING SITE FOR RESIDUE SO4 D1266
08AC8SOFTWAREGLY F:166 , SER G:1338 , ARG G:1342BINDING SITE FOR RESIDUE SO4 G2467
09AC9SOFTWARELYS A:1423 , LEU A:1427 , LYS F:19 , HOH F:2002BINDING SITE FOR RESIDUE SO4 F1266
10BC1SOFTWAREHIS A:1419BINDING SITE FOR RESIDUE SO4 A2266
11BC2SOFTWAREALA G:1350BINDING SITE FOR RESIDUE PEG G2468
12BC3SOFTWAREARG A:1336 , PRO A:1337 , SER A:1338 , ARG A:1341 , GLU D:162 , GLU D:212BINDING SITE FOR RESIDUE MES A2466

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:1271 -A:1458
2B:4 -B:17
3B:209 -B:248
4B:211 -B:264
5C:1271 -C:1458
6D:4 -D:17
7D:209 -D:248
8D:211 -D:264
9E:1271 -E:1458
10F:4 -F:17
11F:209 -F:248
12F:211 -F:264
13G:1271 -G:1458
14H:4 -H:17
15H:209 -H:248
16H:211 -H:264

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (29, 115)

Asymmetric Unit (29, 115)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_011909R72HGP1BA_HUMANPolymorphism6068B/D/F/HR56H
02UniProtVAR_014206L73FGP1BA_HUMANDisease (BSS)121908063B/D/F/HL57F
03UniProtVAR_005256C81RGP1BA_HUMANDisease (BSS)781541857B/D/F/HC65R
04UniProtVAR_013511L86FGP1BA_HUMANPolymorphism13306411B/D/F/HL70F
05UniProtVAR_014207L145PGP1BA_HUMANDisease (BSS)771048666B/D/F/HL129P
06UniProtVAR_005257T161MGP1BA_HUMANPolymorphism6065B/D/F/HT145M
07UniProtVAR_005258A172VGP1BA_HUMANDisease (BSS)121908065B/D/F/HA156V
08UniProtVAR_005260C225SGP1BA_HUMANDisease (BSS)  ---B/D/F/HC209S
09UniProtVAR_019657G249SGP1BA_HUMANDisease (VWDP)  ---B/D/F/HV233S
10UniProtVAR_005261G249VGP1BA_HUMANDisease (VWDP)121908062B/D/F/HV233V
11UniProtVAR_011910A254SGP1BA_HUMANPolymorphism382524B/D/F/HA238S
12UniProtVAR_005262M255VGP1BA_HUMANDisease (VWDP)121908064B/D/F/HV239V
13UniProtVAR_005792H1268DVWF_HUMANDisease (VWD2)61749371A/C/EH1268D
14UniProtVAR_067340C1272FVWF_HUMANDisease (VWD2)63524161A/C/E/GR1272F
15UniProtVAR_005793C1272RVWF_HUMANDisease (VWD2)61749372A/C/E/GR1272R
16UniProtVAR_005794R1306WVWF_HUMANDisease (VWD2)61749384A/C/E/GR1306W
17UniProtVAR_005795R1308CVWF_HUMANDisease (VWD2)61749387A/C/E/GR1308C
18UniProtVAR_005796W1313CVWF_HUMANDisease (VWD2)61749392A/C/E/GW1313C
19UniProtVAR_005797V1314LVWF_HUMANDisease (VWD2)61749393A/C/E/GV1314L
20UniProtVAR_005798V1316MVWF_HUMANDisease (VWD2)61749397A/C/E/GV1316M
21UniProtVAR_005799V1318LVWF_HUMANDisease (VWD2)  ---A/C/E/GV1318L
22UniProtVAR_005800G1324SVWF_HUMANDisease (VWD2)61749398A/C/E/GG1324S
23UniProtVAR_005801R1341QVWF_HUMANDisease (VWD2)61749403A/C/E/GR1341Q
24UniProtVAR_005802R1374CVWF_HUMANDisease (VWD2)61750071A/C/E/GR1374C
25UniProtVAR_005803R1374HVWF_HUMANDisease (VWD2)61750072A/C/E/GR1374H
26UniProtVAR_005804T1381AVWF_HUMANPolymorphism216311A/C/E/GA1381A
27UniProtVAR_005805R1399HVWF_HUMANPolymorphism216312A/C/E/GR1399H
28UniProtVAR_005806L1460VVWF_HUMANDisease (VWD2)61750088A/C/E/GL1460V
29UniProtVAR_005807A1461VVWF_HUMANDisease (VWD2)61750089A/C/E/GA1461V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (29, 29)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_011909R72HGP1BA_HUMANPolymorphism6068BR56H
02UniProtVAR_014206L73FGP1BA_HUMANDisease (BSS)121908063BL57F
03UniProtVAR_005256C81RGP1BA_HUMANDisease (BSS)781541857BC65R
04UniProtVAR_013511L86FGP1BA_HUMANPolymorphism13306411BL70F
05UniProtVAR_014207L145PGP1BA_HUMANDisease (BSS)771048666BL129P
06UniProtVAR_005257T161MGP1BA_HUMANPolymorphism6065BT145M
07UniProtVAR_005258A172VGP1BA_HUMANDisease (BSS)121908065BA156V
08UniProtVAR_005260C225SGP1BA_HUMANDisease (BSS)  ---BC209S
09UniProtVAR_019657G249SGP1BA_HUMANDisease (VWDP)  ---BV233S
10UniProtVAR_005261G249VGP1BA_HUMANDisease (VWDP)121908062BV233V
11UniProtVAR_011910A254SGP1BA_HUMANPolymorphism382524BA238S
12UniProtVAR_005262M255VGP1BA_HUMANDisease (VWDP)121908064BV239V
13UniProtVAR_005792H1268DVWF_HUMANDisease (VWD2)61749371AH1268D
14UniProtVAR_067340C1272FVWF_HUMANDisease (VWD2)63524161AR1272F
15UniProtVAR_005793C1272RVWF_HUMANDisease (VWD2)61749372AR1272R
16UniProtVAR_005794R1306WVWF_HUMANDisease (VWD2)61749384AR1306W
17UniProtVAR_005795R1308CVWF_HUMANDisease (VWD2)61749387AR1308C
18UniProtVAR_005796W1313CVWF_HUMANDisease (VWD2)61749392AW1313C
19UniProtVAR_005797V1314LVWF_HUMANDisease (VWD2)61749393AV1314L
20UniProtVAR_005798V1316MVWF_HUMANDisease (VWD2)61749397AV1316M
21UniProtVAR_005799V1318LVWF_HUMANDisease (VWD2)  ---AV1318L
22UniProtVAR_005800G1324SVWF_HUMANDisease (VWD2)61749398AG1324S
23UniProtVAR_005801R1341QVWF_HUMANDisease (VWD2)61749403AR1341Q
24UniProtVAR_005802R1374CVWF_HUMANDisease (VWD2)61750071AR1374C
25UniProtVAR_005803R1374HVWF_HUMANDisease (VWD2)61750072AR1374H
26UniProtVAR_005804T1381AVWF_HUMANPolymorphism216311AA1381A
27UniProtVAR_005805R1399HVWF_HUMANPolymorphism216312AR1399H
28UniProtVAR_005806L1460VVWF_HUMANDisease (VWD2)61750088AL1460V
29UniProtVAR_005807A1461VVWF_HUMANDisease (VWD2)61750089AA1461V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (29, 29)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_011909R72HGP1BA_HUMANPolymorphism6068DR56H
02UniProtVAR_014206L73FGP1BA_HUMANDisease (BSS)121908063DL57F
03UniProtVAR_005256C81RGP1BA_HUMANDisease (BSS)781541857DC65R
04UniProtVAR_013511L86FGP1BA_HUMANPolymorphism13306411DL70F
05UniProtVAR_014207L145PGP1BA_HUMANDisease (BSS)771048666DL129P
06UniProtVAR_005257T161MGP1BA_HUMANPolymorphism6065DT145M
07UniProtVAR_005258A172VGP1BA_HUMANDisease (BSS)121908065DA156V
08UniProtVAR_005260C225SGP1BA_HUMANDisease (BSS)  ---DC209S
09UniProtVAR_019657G249SGP1BA_HUMANDisease (VWDP)  ---DV233S
10UniProtVAR_005261G249VGP1BA_HUMANDisease (VWDP)121908062DV233V
11UniProtVAR_011910A254SGP1BA_HUMANPolymorphism382524DA238S
12UniProtVAR_005262M255VGP1BA_HUMANDisease (VWDP)121908064DV239V
13UniProtVAR_005792H1268DVWF_HUMANDisease (VWD2)61749371CH1268D
14UniProtVAR_067340C1272FVWF_HUMANDisease (VWD2)63524161CR1272F
15UniProtVAR_005793C1272RVWF_HUMANDisease (VWD2)61749372CR1272R
16UniProtVAR_005794R1306WVWF_HUMANDisease (VWD2)61749384CR1306W
17UniProtVAR_005795R1308CVWF_HUMANDisease (VWD2)61749387CR1308C
18UniProtVAR_005796W1313CVWF_HUMANDisease (VWD2)61749392CW1313C
19UniProtVAR_005797V1314LVWF_HUMANDisease (VWD2)61749393CV1314L
20UniProtVAR_005798V1316MVWF_HUMANDisease (VWD2)61749397CV1316M
21UniProtVAR_005799V1318LVWF_HUMANDisease (VWD2)  ---CV1318L
22UniProtVAR_005800G1324SVWF_HUMANDisease (VWD2)61749398CG1324S
23UniProtVAR_005801R1341QVWF_HUMANDisease (VWD2)61749403CR1341Q
24UniProtVAR_005802R1374CVWF_HUMANDisease (VWD2)61750071CR1374C
25UniProtVAR_005803R1374HVWF_HUMANDisease (VWD2)61750072CR1374H
26UniProtVAR_005804T1381AVWF_HUMANPolymorphism216311CA1381A
27UniProtVAR_005805R1399HVWF_HUMANPolymorphism216312CR1399H
28UniProtVAR_005806L1460VVWF_HUMANDisease (VWD2)61750088CL1460V
29UniProtVAR_005807A1461VVWF_HUMANDisease (VWD2)61750089CA1461V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (29, 29)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_011909R72HGP1BA_HUMANPolymorphism6068FR56H
02UniProtVAR_014206L73FGP1BA_HUMANDisease (BSS)121908063FL57F
03UniProtVAR_005256C81RGP1BA_HUMANDisease (BSS)781541857FC65R
04UniProtVAR_013511L86FGP1BA_HUMANPolymorphism13306411FL70F
05UniProtVAR_014207L145PGP1BA_HUMANDisease (BSS)771048666FL129P
06UniProtVAR_005257T161MGP1BA_HUMANPolymorphism6065FT145M
07UniProtVAR_005258A172VGP1BA_HUMANDisease (BSS)121908065FA156V
08UniProtVAR_005260C225SGP1BA_HUMANDisease (BSS)  ---FC209S
09UniProtVAR_019657G249SGP1BA_HUMANDisease (VWDP)  ---FV233S
10UniProtVAR_005261G249VGP1BA_HUMANDisease (VWDP)121908062FV233V
11UniProtVAR_011910A254SGP1BA_HUMANPolymorphism382524FA238S
12UniProtVAR_005262M255VGP1BA_HUMANDisease (VWDP)121908064FV239V
13UniProtVAR_005792H1268DVWF_HUMANDisease (VWD2)61749371EH1268D
14UniProtVAR_067340C1272FVWF_HUMANDisease (VWD2)63524161ER1272F
15UniProtVAR_005793C1272RVWF_HUMANDisease (VWD2)61749372ER1272R
16UniProtVAR_005794R1306WVWF_HUMANDisease (VWD2)61749384ER1306W
17UniProtVAR_005795R1308CVWF_HUMANDisease (VWD2)61749387ER1308C
18UniProtVAR_005796W1313CVWF_HUMANDisease (VWD2)61749392EW1313C
19UniProtVAR_005797V1314LVWF_HUMANDisease (VWD2)61749393EV1314L
20UniProtVAR_005798V1316MVWF_HUMANDisease (VWD2)61749397EV1316M
21UniProtVAR_005799V1318LVWF_HUMANDisease (VWD2)  ---EV1318L
22UniProtVAR_005800G1324SVWF_HUMANDisease (VWD2)61749398EG1324S
23UniProtVAR_005801R1341QVWF_HUMANDisease (VWD2)61749403ER1341Q
24UniProtVAR_005802R1374CVWF_HUMANDisease (VWD2)61750071ER1374C
25UniProtVAR_005803R1374HVWF_HUMANDisease (VWD2)61750072ER1374H
26UniProtVAR_005804T1381AVWF_HUMANPolymorphism216311EA1381A
27UniProtVAR_005805R1399HVWF_HUMANPolymorphism216312ER1399H
28UniProtVAR_005806L1460VVWF_HUMANDisease (VWD2)61750088EL1460V
29UniProtVAR_005807A1461VVWF_HUMANDisease (VWD2)61750089EA1461V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (28, 28)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_011909R72HGP1BA_HUMANPolymorphism6068HR56H
02UniProtVAR_014206L73FGP1BA_HUMANDisease (BSS)121908063HL57F
03UniProtVAR_005256C81RGP1BA_HUMANDisease (BSS)781541857HC65R
04UniProtVAR_013511L86FGP1BA_HUMANPolymorphism13306411HL70F
05UniProtVAR_014207L145PGP1BA_HUMANDisease (BSS)771048666HL129P
06UniProtVAR_005257T161MGP1BA_HUMANPolymorphism6065HT145M
07UniProtVAR_005258A172VGP1BA_HUMANDisease (BSS)121908065HA156V
08UniProtVAR_005260C225SGP1BA_HUMANDisease (BSS)  ---HC209S
09UniProtVAR_019657G249SGP1BA_HUMANDisease (VWDP)  ---HV233S
10UniProtVAR_005261G249VGP1BA_HUMANDisease (VWDP)121908062HV233V
11UniProtVAR_011910A254SGP1BA_HUMANPolymorphism382524HA238S
12UniProtVAR_005262M255VGP1BA_HUMANDisease (VWDP)121908064HV239V
14UniProtVAR_067340C1272FVWF_HUMANDisease (VWD2)63524161GR1272F
15UniProtVAR_005793C1272RVWF_HUMANDisease (VWD2)61749372GR1272R
16UniProtVAR_005794R1306WVWF_HUMANDisease (VWD2)61749384GR1306W
17UniProtVAR_005795R1308CVWF_HUMANDisease (VWD2)61749387GR1308C
18UniProtVAR_005796W1313CVWF_HUMANDisease (VWD2)61749392GW1313C
19UniProtVAR_005797V1314LVWF_HUMANDisease (VWD2)61749393GV1314L
20UniProtVAR_005798V1316MVWF_HUMANDisease (VWD2)61749397GV1316M
21UniProtVAR_005799V1318LVWF_HUMANDisease (VWD2)  ---GV1318L
22UniProtVAR_005800G1324SVWF_HUMANDisease (VWD2)61749398GG1324S
23UniProtVAR_005801R1341QVWF_HUMANDisease (VWD2)61749403GR1341Q
24UniProtVAR_005802R1374CVWF_HUMANDisease (VWD2)61750071GR1374C
25UniProtVAR_005803R1374HVWF_HUMANDisease (VWD2)61750072GR1374H
26UniProtVAR_005804T1381AVWF_HUMANPolymorphism216311GA1381A
27UniProtVAR_005805R1399HVWF_HUMANPolymorphism216312GR1399H
28UniProtVAR_005806L1460VVWF_HUMANDisease (VWD2)61750088GL1460V
29UniProtVAR_005807A1461VVWF_HUMANDisease (VWD2)61750089GA1461V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 28)

Asymmetric Unit (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.GP1BA_HUMAN72-93
 
 
 
94-115
 
 
 
117-137
 
 
 
141-162
 
 
 
165-186
 
 
 
189-210
 
 
 
  24B:56-77
D:56-77
F:56-77
H:56-77
B:78-99
D:78-99
F:78-99
H:78-99
B:101-121
D:101-121
F:101-121
H:101-121
B:125-146
D:125-146
F:125-146
H:125-146
B:149-170
D:149-170
F:149-170
H:149-170
B:173-194
D:173-194
F:173-194
H:173-194
2VWFAPS50234 VWFA domain profile.VWF_HUMAN1498-1665
1277-1453
 
 
 
1691-1871
  4-
A:1277-1453
C:1277-1453
E:1277-1453
G:1277-1453
-
Biological Unit 1 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.GP1BA_HUMAN72-93
 
 
 
94-115
 
 
 
117-137
 
 
 
141-162
 
 
 
165-186
 
 
 
189-210
 
 
 
  6B:56-77
-
-
-
B:78-99
-
-
-
B:101-121
-
-
-
B:125-146
-
-
-
B:149-170
-
-
-
B:173-194
-
-
-
2VWFAPS50234 VWFA domain profile.VWF_HUMAN1498-1665
1277-1453
 
 
 
1691-1871
  1-
A:1277-1453
-
-
-
-
Biological Unit 2 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.GP1BA_HUMAN72-93
 
 
 
94-115
 
 
 
117-137
 
 
 
141-162
 
 
 
165-186
 
 
 
189-210
 
 
 
  6-
D:56-77
-
-
-
D:78-99
-
-
-
D:101-121
-
-
-
D:125-146
-
-
-
D:149-170
-
-
-
D:173-194
-
-
2VWFAPS50234 VWFA domain profile.VWF_HUMAN1498-1665
1277-1453
 
 
 
1691-1871
  1-
-
C:1277-1453
-
-
-
Biological Unit 3 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.GP1BA_HUMAN72-93
 
 
 
94-115
 
 
 
117-137
 
 
 
141-162
 
 
 
165-186
 
 
 
189-210
 
 
 
  6-
-
F:56-77
-
-
-
F:78-99
-
-
-
F:101-121
-
-
-
F:125-146
-
-
-
F:149-170
-
-
-
F:173-194
-
2VWFAPS50234 VWFA domain profile.VWF_HUMAN1498-1665
1277-1453
 
 
 
1691-1871
  1-
-
-
E:1277-1453
-
-
Biological Unit 4 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.GP1BA_HUMAN72-93
 
 
 
94-115
 
 
 
117-137
 
 
 
141-162
 
 
 
165-186
 
 
 
189-210
 
 
 
  6-
-
-
H:56-77
-
-
-
H:78-99
-
-
-
H:101-121
-
-
-
H:125-146
-
-
-
H:149-170
-
-
-
H:173-194
2VWFAPS50234 VWFA domain profile.VWF_HUMAN1498-1665
1277-1453
 
 
 
1691-1871
  1-
-
-
-
G:1277-1453
-

(-) Exons   (2, 8)

Asymmetric Unit (2, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002614051ENSE00001184496chr12:6233836-6233587250VWF_HUMAN-00--
1.2ENST000002614052ENSE00001653826chr12:6232362-623230855VWF_HUMAN1-19190--
1.4ENST000002614054ENSE00001261893chr12:6230504-6230340165VWF_HUMAN19-74560--
1.5ENST000002614055ENSE00001261546chr12:6220134-6220032103VWF_HUMAN74-108350--
1.6ENST000002614056ENSE00002152539chr12:6219748-6219540209VWF_HUMAN108-178710--
1.7aENST000002614057aENSE00001676171chr12:6204750-6204626125VWF_HUMAN178-219420--
1.8ENST000002614058ENSE00001682720chr12:6184717-6184501217VWF_HUMAN220-292730--
1.9ENST000002614059ENSE00001640051chr12:6182907-6182785123VWF_HUMAN292-333420--
1.10ENST0000026140510ENSE00001656280chr12:6181608-6181497112VWF_HUMAN333-370380--
1.11ENST0000026140511ENSE00001700039chr12:6180509-618046347VWF_HUMAN370-386170--
1.12ENST0000026140512ENSE00001674584chr12:6174439-6174303137VWF_HUMAN386-431460--
1.13ENST0000026140513ENSE00001645253chr12:6173550-6173412139VWF_HUMAN432-478470--
1.14ENST0000026140514ENSE00001679915chr12:6172220-6172120101VWF_HUMAN478-511340--
1.15ENST0000026140515ENSE00001640163chr12:6167210-6167015196VWF_HUMAN512-577660--
1.16ENST0000026140516ENSE00001727074chr12:6166238-6166023216VWF_HUMAN577-649730--
1.17bENST0000026140517bENSE00000936967chr12:6161949-6161709241VWF_HUMAN649-729810--
1.18ENST0000026140518ENSE00000936968chr12:6155983-615588995VWF_HUMAN729-761330--
1.19ENST0000026140519ENSE00000936969chr12:6153617-6153457161VWF_HUMAN761-814540--
1.20ENST0000026140520ENSE00000936970chr12:6145657-6145554104VWF_HUMAN815-849350--
1.21ENST0000026140521ENSE00000936971chr12:6143992-6143854139VWF_HUMAN849-895470--
1.22ENST0000026140522ENSE00000936972chr12:6140744-6140610135VWF_HUMAN896-940450--
1.23ENST0000026140523ENSE00000936973chr12:6138654-6138508147VWF_HUMAN941-989490--
1.24ENST0000026140524ENSE00000936974chr12:6135212-6135072141VWF_HUMAN990-1036470--
1.25ENST0000026140525ENSE00001731504chr12:6134859-6134746114VWF_HUMAN1037-1074380--
1.26ENST0000026140526ENSE00000936976chr12:6132953-6132797157VWF_HUMAN1075-1127530--
1.27ENST0000026140527ENSE00001792722chr12:6132064-6131906159VWF_HUMAN1127-1180540--
1.28ENST0000026140528ENSE00001679248chr12:6131201-6131066136VWF_HUMAN1180-1225460--
1.29ENST0000026140529ENSE00001749068chr12:6128909-61275311379VWF_HUMAN1225-16854614A:1267-1465
C:1268-1466
E:1267-1465
G:1269-1465
199
199
199
197
1.30ENST0000026140530ENSE00001676963chr12:6126036-6125920117VWF_HUMAN1685-1724400--
1.31ENST0000026140531ENSE00001646337chr12:6125822-6125682141VWF_HUMAN1724-1771480--
1.32ENST0000026140532ENSE00001603271chr12:6125398-6125255144VWF_HUMAN1771-1819490--
1.33ENST0000026140533ENSE00000936983chr12:6122811-6122647165VWF_HUMAN1819-1874560--
1.34ENST0000026140534ENSE00001761241chr12:6121296-612125344VWF_HUMAN1874-1888150--
1.35ENST0000026140535ENSE00001622286chr12:6120960-6120783178VWF_HUMAN1889-1948600--
1.36ENST0000026140536ENSE00001261636chr12:6105388-6105168221VWF_HUMAN1948-2021740--
1.37ENST0000026140537ENSE00000866874chr12:6103773-6103581193VWF_HUMAN2022-2086650--
1.38ENST0000026140538ENSE00000866873chr12:6103369-6103028342VWF_HUMAN2086-22001150--
1.39ENST0000026140539ENSE00001328745chr12:6101184-6100985200VWF_HUMAN2200-2266670--
1.40ENST0000026140540ENSE00001261609chr12:6094831-6094729103VWF_HUMAN2267-2301350--
1.41ENST0000026140541ENSE00001261603chr12:6094285-609421175VWF_HUMAN2301-2326260--
1.42ENST0000026140542ENSE00000866869chr12:6092420-6092316105VWF_HUMAN2326-2361360--
1.43ENST0000026140543ENSE00001309185chr12:6091157-6090952206VWF_HUMAN2361-2429690--
1.44ENST0000026140544ENSE00000866867chr12:6085426-6085277150VWF_HUMAN2430-2479500--
1.45ENST0000026140545ENSE00001261579chr12:6080875-6080765111VWF_HUMAN2480-2516370--
1.46ENST0000026140546ENSE00001316394chr12:6078557-6078377181VWF_HUMAN2517-2577610--
1.47ENST0000026140547ENSE00000866864chr12:6077333-607729341VWF_HUMAN2577-2590140--
1.48ENST0000026140548ENSE00001289624chr12:6076768-6076652117VWF_HUMAN2591-2629390--
1.49ENST0000026140549ENSE00001312819chr12:6062760-606266299VWF_HUMAN2630-2662330--
1.50ENST0000026140550ENSE00001326641chr12:6061685-6061557129VWF_HUMAN2663-2705430--
1.51ENST0000026140551ENSE00001307387chr12:6061049-606101040VWF_HUMAN2706-2719140--
1.52aENST0000026140552aENSE00001293437chr12:6059049-605895298VWF_HUMAN2719-2751330--
1.53bENST0000026140553bENSE00001314535chr12:6058369-6058040330VWF_HUMAN2752-2813620--

2.2bENST000003291252bENSE00001299958chr17:4835900-48371501251GP1BA_HUMAN1-4174174B:2-265
D:2-265 (gaps)
F:2-265
H:3-265 (gaps)
264
264
264
263
2.3aENST000003291253aENSE00001488421chr17:4837187-4837858672GP1BA_HUMAN418-6402230--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:199
 aligned with VWF_HUMAN | P04275 from UniProtKB/Swiss-Prot  Length:2813

    Alignment length:199
                                  1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456         
           VWF_HUMAN   1267 LHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRITLLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
               SCOP domains d4c2ba_ A: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeeeeee...eee........hhhhhhhhhhh.........hhhhhhhhhhhh..........eeeeeeee..........hhhhhhhhhhhh..eeeeeee....hhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhh....... Sec.struct. author
             SAPs(SNPs) (1) -D---F---------------------------------W-C----CL-M-L-----S----------------Q--------------------------------C------A-----------------H------------------------------------------------------------VV---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----R-----------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------VWFA  PDB: A:1277-1453 UniProt: 1277-1453                                                                                                                                        ------------ PROSITE
               Transcript 1 Exon 1.29  PDB: A:1267-1465 UniProt: 1225-1685 [INCOMPLETE]                                                                                                                                             Transcript 1
                4c2b A 1267 LHDFCRSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
                                  1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456         

Chain B from PDB  Type:PROTEIN  Length:264
 aligned with GP1BA_HUMAN | P07359 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:264
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         GP1BA_HUMAN     18 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCP  281
               SCOP domains d4c2bb_ B: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee....eeee................eeeee.......eee.hhhh......eee.......eee.........eee....................eee.....................eee.....................eee.....................eee....................eee...........hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhh.........hhhh...... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------HF-------R----F----------------------------------------------------------P---------------M----------V----------------------------------------------------S-----------------------S----SV-------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------LRR  PDB: B:56-77     LRR  PDB: B:78-99     -LRR  PDB: B:101-121  ---LRR  PDB: B:125-146   --LRR  PDB: B:149-170   --LRR  PDB: B:173-194   ----------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.2b  PDB: B:2-265 UniProt: 1-417 [INCOMPLETE]                                                                                                                                                                                                                      Transcript 2
                4c2b B    2 PICEVSKVASHLEVNCDKRRLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNRLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQVVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCP  265
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261    

Chain C from PDB  Type:PROTEIN  Length:199
 aligned with VWF_HUMAN | P04275 from UniProtKB/Swiss-Prot  Length:2813

    Alignment length:199
                                  1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457         
           VWF_HUMAN   1268 HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRITLLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP 1466
               SCOP domains d4c2bc_ C: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee.....hhhhhhhhhhhhhhhhhhh......eeeeeeee...eee........hhhhhhhhhh............hhhhhhhhhh..........eeeeeeee..........hhhhhhhhhhhh.eeeeeee.....hhhhhhhhhh...........hhhhhh.hhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) D---F---------------------------------W-C----CL-M-L-----S----------------Q--------------------------------C------A-----------------H------------------------------------------------------------VV----- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----R-----------------------------------------------------------------------------------------------------H-------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------VWFA  PDB: C:1277-1453 UniProt: 1277-1453                                                                                                                                        ------------- PROSITE
               Transcript 1 Exon 1.29  PDB: C:1268-1466 UniProt: 1225-1685 [INCOMPLETE]                                                                                                                                             Transcript 1
                4c2b C 1268 HDFCRSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAPP 1466
                                  1277      1287      1297      1307      1317      1327      1337      1347      1357      1367      1377      1387      1397      1407      1417      1427      1437      1447      1457         

Chain D from PDB  Type:PROTEIN  Length:262
 aligned with GP1BA_HUMAN | P07359 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:264
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         GP1BA_HUMAN     18 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCP  281
               SCOP domains d4c2bd_ D: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee..eeeee................eeeee.......eee.hhhh......eee.......eee.........eee....................eee.....................eee.....................eee.....................eee....................eee...........hhhhhhhhhhhhhh.eeeeee..eeeeee.hhh.ee..--.ee.hhh...... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------HF-------R----F----------------------------------------------------------P---------------M----------V----------------------------------------------------S-----------------------S----SV-------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------LRR  PDB: D:56-77     LRR  PDB: D:78-99     -LRR  PDB: D:101-121  ---LRR  PDB: D:125-146   --LRR  PDB: D:149-170   --LRR  PDB: D:173-194   ----------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.2b  PDB: D:2-265 (gaps) UniProt: 1-417 [INCOMPLETE]                                                                                                                                                                                                               Transcript 2
                4c2b D    2 PICEVSKVASHLEVNCDKRRLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNRLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQVVDVKAVTSNVASVQCDN--KFPVYKYPGKGCP  265
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241        |- |     261    
                                                                                                                                                                                                                                                                                  250  |            
                                                                                                                                                                                                                                                                                     253            

Chain E from PDB  Type:PROTEIN  Length:199
 aligned with VWF_HUMAN | P04275 from UniProtKB/Swiss-Prot  Length:2813

    Alignment length:199
                                  1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456         
           VWF_HUMAN   1267 LHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRITLLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
               SCOP domains d4c2be_ E: automated matches                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...eeeeeeee.......hhhhhhhhhhhhhhhh.......eeeeeeee..eeee........hhhhhhhhhhh.........hhhhhhhhhhhh..........eeeeeeee..........hhhhhhhhhhhh..eeeeeee....hhhhhhhhhh.......eee.hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) -D---F---------------------------------W-C----CL-M-L-----S----------------Q--------------------------------C------A-----------------H------------------------------------------------------------VV---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----R-----------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------VWFA  PDB: E:1277-1453 UniProt: 1277-1453                                                                                                                                        ------------ PROSITE
               Transcript 1 Exon 1.29  PDB: E:1267-1465 UniProt: 1225-1685 [INCOMPLETE]                                                                                                                                             Transcript 1
                4c2b E 1267 LHDFCRSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
                                  1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456         

Chain F from PDB  Type:PROTEIN  Length:264
 aligned with GP1BA_HUMAN | P07359 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:264
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277    
         GP1BA_HUMAN     18 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCP  281
               SCOP domains d4c2bf_ F: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee.....eeee................eeeee.......eee.hhh.......eee.......eee.........eee....................eee.....................eee.....................eee.....................eee....................eee...........hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhh.........hhhh...... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------HF-------R----F----------------------------------------------------------P---------------M----------V----------------------------------------------------S-----------------------S----SV-------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------LRR  PDB: F:56-77     LRR  PDB: F:78-99     -LRR  PDB: F:101-121  ---LRR  PDB: F:125-146   --LRR  PDB: F:149-170   --LRR  PDB: F:173-194   ----------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.2b  PDB: F:2-265 UniProt: 1-417 [INCOMPLETE]                                                                                                                                                                                                                      Transcript 2
                4c2b F    2 PICEVSKVASHLEVNCDKRRLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNRLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQVVDVKAVTSNVASVQCDNSDKFPVYKYPGKGCP  265
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261    

Chain G from PDB  Type:PROTEIN  Length:197
 aligned with VWF_HUMAN | P04275 from UniProtKB/Swiss-Prot  Length:2813

    Alignment length:197
                                  1278      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398      1408      1418      1428      1438      1448      1458       
           VWF_HUMAN   1269 DFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRITLLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
               SCOP domains d4c2bg_ G: automated matches                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeeeeee...eee........hhhhhhhhhhhh........hhhhhhhhhhhh..........eeeeeeee....hhhhh.hhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhh.....eee........hhhhhhhhhh....... Sec.struct. author
             SAPs(SNPs) (1) ---F---------------------------------W-C----CL-M-L-----S----------------Q--------------------------------C------A-----------------H------------------------------------------------------------VV---- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---R-----------------------------------------------------------------------------------------------------H------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------VWFA  PDB: G:1277-1453 UniProt: 1277-1453                                                                                                                                        ------------ PROSITE
               Transcript 1 Exon 1.29  PDB: G:1269-1465 UniProt: 1225-1685 [INCOMPLETE]                                                                                                                                           Transcript 1
                4c2b G 1269 DFCRSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEAP 1465
                                  1278      1288      1298      1308      1318      1328      1338      1348      1358      1368      1378      1388      1398      1408      1418      1428      1438      1448      1458       

Chain H from PDB  Type:PROTEIN  Length:261
 aligned with GP1BA_HUMAN | P07359 from UniProtKB/Swiss-Prot  Length:652

    Alignment length:263
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
         GP1BA_HUMAN     19 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGKGCP  281
               SCOP domains d4c2bh_ H: automated matches                                                                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeeee..................eee.......eee.hhhh......eee.......eee.........eee....................eee.....................eee.....................eee.....................eee....................eee...........hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhh...--....hhhh...... Sec.struct. author
             SAPs(SNPs) (1) -----------------------------------------------------HF-------R----F----------------------------------------------------------P---------------M----------V----------------------------------------------------S-----------------------S----SV-------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------LRR  PDB: H:56-77     LRR  PDB: H:78-99     -LRR  PDB: H:101-121  ---LRR  PDB: H:125-146   --LRR  PDB: H:149-170   --LRR  PDB: H:173-194   ----------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.2b  PDB: H:3-265 (gaps) UniProt: 1-417 [INCOMPLETE]                                                                                                                                                                                                              Transcript 2
                4c2b H    3 ICEVSKVASHLEVNCDKRRLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNRLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQVVDVKAVTSNVASVQCD--DKFPVYKYPGKGCP  265
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      |252       262   
                                                                                                                                                                                                                                                                                249  |             
                                                                                                                                                                                                                                                                                   252             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C2B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C2B)

(-) Gene Ontology  (45, 52)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (VWF_HUMAN | P04275)
molecular function
    GO:0051087    chaperone binding    Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
    GO:0005518    collagen binding    Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0019865    immunoglobulin binding    Interacting selectively and non-covalently with an immunoglobulin.
    GO:0005178    integrin binding    Interacting selectively and non-covalently with an integrin.
    GO:0002020    protease binding    Interacting selectively and non-covalently with any protease or peptidase.
    GO:0047485    protein N-terminus binding    Interacting selectively and non-covalently with a protein N-terminus, the end of any peptide chain at which the 2-amino (or 2-imino) function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007597    blood coagulation, intrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0031589    cell-substrate adhesion    The attachment of a cell to the underlying substrate via adhesion molecules.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0035902    response to immobilization stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of being rendered immobile.
    GO:0009611    response to wounding    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
cellular component
    GO:0033093    Weibel-Palade body    A large, elongated, rod-shaped secretory granule characteristic of vascular endothelial cells that contain a number of structurally and functionally distinct proteins, of which the best characterized are von Willebrand factor (VWF) and P-selectin. Weibel-Palade bodies are formed from the trans-Golgi network in a process that depends on VWF, which is densely packed in a highly organized manner, and on coat proteins that remain associated with the granules. Upon cell stimulation, regulated exocytosis releases the contained proteins to the cell surface, where they act in the recruitment of platelets and leukocytes and in inflammatory and vasoactive responses.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031012    extracellular matrix    A structure lying external to one or more cells, which provides structural support for cells or tissues.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0031091    platelet alpha granule    A secretory organelle found in blood platelets, which is unique in that it exhibits further compartmentalization and acquires its protein content via two distinct mechanisms: (1) biosynthesis predominantly at the megakaryocyte (MK) level (with some vestigial platelet synthesis) (e.g. platelet factor 4) and (2) endocytosis and pinocytosis at both the MK and circulating platelet levels (e.g. fibrinogen (Fg) and IgG).
    GO:0031093    platelet alpha granule lumen    The volume enclosed by the membrane of the platelet alpha granule.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Chain B,D,F,H   (GP1BA_HUMAN | P07359)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004860    protein kinase inhibitor activity    Stops, prevents or reduces the activity of a protein kinase, an enzyme which phosphorylates a protein.
    GO:0015057    thrombin-activated receptor activity    A G-protein-coupled receptor activity that is activated by cleavage by thrombin, which exposes a tethered ligand corresponding to the new N-terminus, which binds to the receptor and activates it.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007597    blood coagulation, intrinsic pathway    A protein activation cascade that contributes to blood coagulation and consists of the interactions among high molecular weight kininogen, prekallikrein, and factor XII that lead to the activation of clotting factor X.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0000902    cell morphogenesis    The developmental process in which the size or shape of a cell is generated and organized.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0019221    cytokine-mediated signaling pathway    A series of molecular signals initiated by the binding of a cytokine to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0046426    negative regulation of JAK-STAT cascade    Any process that stops, prevents, or reduces the frequency, rate or extent of the JAK-STAT signaling pathway activity.
    GO:0006469    negative regulation of protein kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0030193    regulation of blood coagulation    Any process that modulates the frequency, rate or extent of blood coagulation.
    GO:0070493    thrombin-activated receptor signaling pathway    The series of molecular signals generated as a consequence of a thrombin-activated receptor binding to one of its physiological ligands.
cellular component
    GO:0031362    anchored component of external side of plasma membrane    The component of the plasma membrane consisting of the gene products that are tethered to the external side of the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GP1BA_HUMAN | P073591gwb 1k13 1m0z 1m10 1ook 1p8v 1p9a 1qyy 1sq0 1u0n 2bp3 3p72 3pmh 4c2a 4ch2 4ch8 4mgx 4yr6
        VWF_HUMAN | P042751ao3 1atz 1auq 1fe8 1fns 1ijb 1ijk 1m10 1oak 1sq0 1u0n 1uex 2adf 2mhp 2mhq 3gxb 3hxo 3hxq 3ppv 3ppw 3ppx 3ppy 3zqk 4c29 4c2a 4dmu 4nt5 5bv8

(-) Related Entries Specified in the PDB File

4c29 CRYSTAL STRUCTURE OF HIGH-AFFINITY VON WILLEBRAND FACTOR A1 DOMAIN WITH DISULFIDE MUTATION
4c2a CRYSTAL STRUCTURE OF HIGH-AFFINITY VON WILLEBRAND FACTOR A1 DOMAIN WITH R1306Q AND I1309V MUTATIONS IN COMPLEX WITH HIGH AFFINITY GPIB ALPHA