4C22 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   L-FUCOSE ISOMERASE IN COMPLEX WITH FUCULOSE

Authors :   M. A. Higgins, M. D. L. Suits, C. Marsters, A. B. Boraston

Date :   16 Aug 13 (Deposition) - 11 Dec 13 (Release) - 30 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (3x)

Keywords :   Fucose Processing, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Higgins, M. D. Suits, C. Marsters, A. B. Boraston
Structural And Functional Analysis Of Fucose-Processing Enzymes From Streptococcus Pneumoniae.
J. Mol. Biol. V. 426 1469 2014
PubMed-ID: 24333485 | Reference-DOI: 10.1016/J.JMB.2013.12.006

Molecule 1 - L-FUCOSE ISOMERASE
	Chains	:	A, B
	EC Number	:	5.3.1.25
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4
	Synonym	:	6-DEOXY-L-GALACTOSE ISOMERASE, FUCIASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (3x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 20)

No.	Name	Count	Type	Full Name
1	CVU	2	Ligand/Ion	L-FUCULOSE OPEN FORM
2	EDO	14	Ligand/Ion	1,2-ETHANEDIOL
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	MN	2	Ligand/Ion	MANGANESE (II) ION

Biological Unit 1 (3, 54)

No.	Name	Count	Type	Full Name
1	CVU	6	Ligand/Ion	L-FUCULOSE OPEN FORM
2	EDO	42	Ligand/Ion	1,2-ETHANEDIOL
3	FUC	6	Ligand/Ion	ALPHA-L-FUCOSE
4	MN	-1	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:335 , ASP A:359 , HIS A:525 , CVU A:1589 , HOH A:2139	BINDING SITE FOR RESIDUE MN A 601
02	AC2	SOFTWARE	TRP A:231 , ASN A:235 , ASP A:322 , GLY A:325 , GLU A:418 , GLN A:422	BINDING SITE FOR RESIDUE FUC A 603
03	AC3	SOFTWARE	GLU B:335 , ASP B:359 , HIS B:525 , CVU B:1589 , HOH B:2137	BINDING SITE FOR RESIDUE MN B 601
04	AC4	SOFTWARE	TRP B:231 , ASN B:235 , ASP B:322 , GLY B:325 , GLU B:418 , VAL B:421	BINDING SITE FOR RESIDUE FUC B 603
05	AC5	SOFTWARE	ARG A:16 , TRP A:88 , PRO A:114 , VAL A:117 , MET A:183 , GLN A:300 , GLU A:335 , ASP A:359 , SER A:391 , TYR A:437 , TRP A:496 , ASN A:524 , HIS A:525 , MN A:601	BINDING SITE FOR RESIDUE CVU A1589
06	AC6	SOFTWARE	ARG B:16 , TRP B:88 , PRO B:114 , GLN B:300 , GLU B:335 , ASP B:359 , SER B:391 , TYR B:437 , ASN B:524 , HIS B:525 , MN B:601	BINDING SITE FOR RESIDUE CVU B1589
07	AC7	SOFTWARE	ILE B:538 , ALA B:541 , SER B:542 , ILE B:546 , VAL B:548 , ARG B:560 , ASP B:576 , CYS B:580	BINDING SITE FOR RESIDUE EDO B1590
08	AC8	SOFTWARE	ARG B:10 , THR B:81 , THR B:83 , MET B:95 , ASP B:96 , ALA B:104 , TYR B:118 , HIS B:126	BINDING SITE FOR RESIDUE EDO B1591
09	AC9	SOFTWARE	GLU A:314 , ASN A:318 , PHE A:332 , THR A:334 , GLN A:355 , PHE A:357 , ASN A:390 , SER A:393 , CYS A:394 , THR A:395	BINDING SITE FOR RESIDUE EDO A1590
10	BC1	SOFTWARE	THR B:167 , MET B:170 , ARG B:171 , TYR B:198 , LEU B:199 , LEU B:544 , LEU B:586 , HIS B:587 , HOH B:2037	BINDING SITE FOR RESIDUE EDO B1592
11	BC2	SOFTWARE	GLY A:15 , ARG A:17 , ARG A:21 , GLU A:65 , LEU B:-8 , GLU B:285	BINDING SITE FOR RESIDUE EDO A1591
12	BC3	SOFTWARE	GLU B:314 , ASN B:318 , PHE B:332 , THR B:334 , GLN B:355 , PHE B:357 , SER B:393 , CYS B:394 , THR B:395	BINDING SITE FOR RESIDUE EDO B1593
13	BC4	SOFTWARE	ASP A:100 , ILE A:101 , ARG A:171 , LEU A:586 , HIS A:587 , HOH A:2024 , HOH A:2058	BINDING SITE FOR RESIDUE EDO A1592
14	BC5	SOFTWARE	LEU B:119 , LEU B:123 , ASN B:519 , LYS B:562 , HOH B:2194	BINDING SITE FOR RESIDUE EDO B1594
15	BC6	SOFTWARE	PRO A:99 , ARG B:171 , ASP B:172 , HIS B:587	BINDING SITE FOR RESIDUE EDO A1593
16	BC7	SOFTWARE	ARG A:171 , ASP A:172 , GLY A:200 , HIS A:587 , PRO B:99	BINDING SITE FOR RESIDUE EDO A1594
17	BC8	SOFTWARE	ARG A:62 , HOH A:2123 , ARG B:214 , GLU B:285 , GLU B:286 , GLY B:289 , HIS B:290 , HOH B:2117	BINDING SITE FOR RESIDUE EDO B1595
18	BC9	SOFTWARE	ARG A:10 , THR A:81 , THR A:83 , MET A:95 , ASP A:96 , ALA A:104 , HIS A:126 , HOH A:2003	BINDING SITE FOR RESIDUE EDO A1595
19	CC1	SOFTWARE	PHE B:108 , ASN B:109 , GLY B:110 , ARG B:113 , PRO B:114 , GLY B:115 , ALA B:116 , TYR B:137 , ARG B:361 , THR B:362 , HOH B:2144	BINDING SITE FOR RESIDUE EDO B1596
20	CC2	SOFTWARE	LEU A:119 , ALA A:120 , LEU A:123 , MET A:518 , ASN A:519 , TRP A:521 , LYS A:562 , HOH A:2191	BINDING SITE FOR RESIDUE EDO A1596

(no "SS Bond" information available for 4C22)

Asymmetric Unit

No.	Residues
1	Gln A:300	-	Arg A:301
2	Ser B:-10	-	Gly B:-9
3	Arg B:-5	-	Gly B:-4
4	Gln B:300	-	Arg B:301

(no "SAP(SNP)/Variant" information available for 4C22)

(no "PROSITE Motif" information available for 4C22)

(no "Exon" information available for 4C22)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:587
 aligned with FUCI_STRPN | Q97N97 from UniProtKB/Swiss-Prot  Length:588

    Alignment length:587
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       
           FUCI_STRPN     2 IQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLKYPDGEPVECVISPSTIGRVPEAAASHELFKKSNVCATITVTPCWCYGSETMDMSPDIPHAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEASDTDIPEDVKEKLLRYARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRMDRGIYDPEEFERALKWVKENVKEGFDHNREDLVLSREEKDRQWEFVIKMFMIGRDLMVGNPRLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFATENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGRAAAGFLHLINSGSCTLDGTGQATRDGKPIMKPFWELEESEVQAMLENTDFPPANREYFRGGGFSTRFLTKGDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGKGAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSLFGTEDLESADYRACQLLGPLHK 588
               SCOP domains d4c22a1 A:2-353 automated matches                                                                                                                                                                                                                                                                                                                               d4c22a2 A:354-588 automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.........eee......hhhhhhhhhhhhhh..eeeeeeee.................eeeee......hhhhhhhhhhhhhhhh....eee.............hhhhhhhhhhhhhhhhhhhhhh..eeeee......hhhhh.hhhhhhhhhh.eeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..eeeeee............hhhhhhhhhh.ee..ee....eeee..hhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh...hhhhhhheeeee.....hhhhhh.eee..eee..hhhhhhhhhhhhhhhh..........................eeeeeeeeee...eeeeeeeeeee...hhhhhhhhhhh.......eeeee.........hhhhhhhhh...eeeeee..hhhhhhhhhhhhh........hhhhh..hhhhhhhh..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c22 A   2 IQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLKYPDGEPVECVISPSTIGRVPEAAASHELFKKSNVCATITVTPCWCYGSETMDMSPDIPHAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEASDTDIPEDVKEKLLRYARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRMDRGIYDPEEFERALKWVKENVKEGFDHNREDLVLSREEKDRQWEFVIKMFMIGRDLMVGNPRLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFATENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGRAAAGFLHLINSGSCTLDGTGQATRDGKPIMKPFWELEESEVQAMLENTDFPPANREYFRGGGFSTRFLTKGDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGKGAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSLFGTEDLESADYRACQLLGPLHK 588
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581

Chain B from PDB  Type:PROTEIN  Length:604
 aligned with FUCI_STRPN | Q97N97 from UniProtKB/Swiss-Prot  Length:588

    Alignment length:604
                                            1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                     -      |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584    
           FUCI_STRPN     - ----------------MIQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLKYPDGEPVECVISPSTIGRVPEAAASHELFKKSNVCATITVTPCWCYGSETMDMSPDIPHAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEASDTDIPEDVKEKLLRYARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRMDRGIYDPEEFERALKWVKENVKEGFDHNREDLVLSREEKDRQWEFVIKMFMIGRDLMVGNPRLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFATENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGRAAAGFLHLINSGSCTLDGTGQATRDGKPIMKPFWELEESEVQAMLENTDFPPANREYFRGGGFSTRFLTKGDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGKGAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSLFGTEDLESADYRACQLLGPLHK 588
               SCOP domains d4c22b1 B:-15-353 automated matches                                                                                                                                                                                                                                                                                                                                              d4c22b2 B:354-588 automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.........eee......hhhhhhhhhhhhh...eeeeeeee....hhhhhh.......eeeee......hhhhhhhhhhhhhhhh....eeee............hhhhhhhhhhhhhhhhhhhhhh..eeeee......hhhhh.hhhhhhhhhh.eeeee.hhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..eeeeee............hhhhhhhhhh.ee..ee....eeee..hhhhhhhhhhhhhhhh...eeeeeeeeehhhhhhhhhh...hhhhh..eeee......hhhhhh.eee..eee..hhhhhhhhhhhhhhhh..........................eeeeeeeeee...eeeeeeeeeee...hhhhhhhhhhh.......eeeee.........hhhhhhhh....eeeeee..hhhhhhhhhhhh.........hhhhh..hhhhhhhh..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c22 B -15 HHHHSSGLVPRGSHMASIQHPRIGIRPTIDGRRQGVRESLEVQTMNMAKSVADLISSTLKYPDGEPVECVISPSTIGRVPEAAASHELFKKSNVCATITVTPCWCYGSETMDMSPDIPHAIWGFNGTERPGAVYLAAVLASHAQKGIPAFGIYGRDVQEASDTDIPEDVKEKLLRYARAALATGLMRDTAYLSMGSVSMGIGGSIVNPDFFQEYLGMRNESVDMTEFTRRMDRGIYDPEEFERALKWVKENVKEGFDHNREDLVLSREEKDRQWEFVIKMFMIGRDLMVGNPRLAELGFEEEAVGHHALVAGFQGQRQWTDHFPNGDFMETFLNTQFDWNGIRKPFVFATENDSLNGVSMLFNYLLTNTPQIFADVRTYWSPEAVKRVTGHTLEGRAAAGFLHLINSGSCTLDGTGQATRDGKPIMKPFWELEESEVQAMLENTDFPPANREYFRGGGFSTRFLTKGDMPVTMVRLNLLKGVGPVLQIAEGYTLELPEDVHHTLDNRTDPGWPTTWFAPRLTGKGAFKSVYDVMNNWGANHGAITYGHIGADLITLASMLRIPVNMHNVPEEDIFRPKNWSLFGTEDLESADYRACQLLGPLHK 588
                                    -6         4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4C22)

(no "Pfam Domain" information available for 4C22)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FUCI_STRPN | Q97N97)

molecular function
	GO:0008736	L-fucose isomerase activity	Catalysis of the reaction: L-fucose = L-fuculose.
	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor, which is an aldose or a ketose, are the same molecule, and no oxidized product appears.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0042355	L-fucose catabolic process	The chemical reactions and pathways resulting in the breakdown of L-fucose (6-deoxy-Lgalactose).
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0019317	fucose catabolic process	The chemical reactions and pathways resulting in the breakdown of fucose (6-deoxygalactose).
	GO:0006004	fucose metabolic process	The chemical reactions and pathways involving fucose, or 6-deoxygalactose, which has two enantiomers, D-fucose and L-fucose.
	GO:0005996	monosaccharide metabolic process	The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
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	Cis Peptide Bonds
		Arg B:-5 - Gly B:-4	[ RasMol ]
		Gln A:300 - Arg A:301	[ RasMol ]
		Gln B:300 - Arg B:301	[ RasMol ]
		Ser B:-10 - Gly B:-9	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Access by PDB/NDB ID
	4c22
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	FUCI_STRPN \| Q97N97
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	5.3.1.25
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	FUCI_STRPN \| Q97N97
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UniProtKB/Swiss-Prot
	FUCI_STRPN \| Q97N97	:	4c20 4c21

4c20	L-FUCOSE ISOMERASE
4c21	L-FUCOSE ISOMERASE IN COMPLEX WITH FUCITOL
4c23	L-FUCULOSE KINASE
4c24	L-FUCULOSE 1-PHOSPHATE ALDOLASE
4c25	L-FUCULOSE 1-PHOSPHATE ALDOLASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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