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(-) Description

Title :  ESTERASE DOMAIN OF THE ZFL2-1 ORF1 PROTEIN FROM THE ZEBRAFISH ZFL2-1 RETROTRANSPOSON
 
Authors :  A. M. Schneider, O. Weichenrieder
Date :  11 Aug 13  (Deposition) - 11 Sep 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Hydrolase, Retrotransposition, Rna-Binding, Membrane-Binding, Lipid-Binding, Self-Association (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. M. Schneider, S. Schmidt, S. Jonas, B. Vollmer, E. Khazina, O. Weichenrieder
Structure And Properties Of The Esterase From Non-Ltr Retrotransposons Suggest A Role For Lipids In Retrotransposition.
Nucleic Acids Res. V. 41 10563 2013
PubMed-ID: 24003030  |  Reference-DOI: 10.1093/NAR/GKT786

(-) Compounds

Molecule 1 - ORF1-ENCODED PROTEIN
    ChainsA, B, C
    EC Number3.1.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPETM41P
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantSTAR
    FragmentSGNH ESTERASE DOMAIN, RESIDUES 136-302
    Organism CommonZEBRAFISH
    Organism ScientificDANIO RERIO
    Organism Taxid7955
    Other DetailsSYNTHETIC CODON-OPTIMIZED DNA SEQUENCE
    SynonymZFL2-1 ORF1P

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)AB 
Biological Unit 2 (2x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4C1B)

(-) Sites  (0, 0)

(no "Site" information available for 4C1B)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4C1B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C1B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C1B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4C1B)

(-) Exons   (0, 0)

(no "Exon" information available for 4C1B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:171
 aligned with Q3LG57_DANRE | Q3LG57 from UniProtKB/TrEMBL  Length:302

    Alignment length:171
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301 
         Q3LG57_DANRE   132 ESGPDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVKNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRTI 302
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee................eeeee.....hhhhhhhhhhhh.......eeeee.........hhhhhhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhhhhhh...eee..hhhh...............hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c1b A 132 GPAMDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVKNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRTI 302
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301 

Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q3LG57_DANRE | Q3LG57 from UniProtKB/TrEMBL  Length:302

    Alignment length:168
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294        
         Q3LG57_DANRE   135 PDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVKNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRTI 302
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee................eeeee.....hhhhhhhhhhh........eeeee..hhhh...hhhhhhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhhhhhh...eee.hhhhh...............hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4c1b B 135 MDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVKNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRTI 302
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294        

Chain C from PDB  Type:PROTEIN  Length:158
 aligned with Q3LG57_DANRE | Q3LG57 from UniProtKB/TrEMBL  Length:302

    Alignment length:167
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       
         Q3LG57_DANRE   135 PDVAIIGDSIVRHVRAASSKGNKVRTFCFPGARVKNISTQIPTILGAAESPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRT 301
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.........-----.eeeeee.....hhhhhh.hhhh.----...eeeee.........hhhhhhhhhhhhhhhhhhh......eee.........hhhhhhhhhhhhhhhhhhhh...eee..hhhh...............hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c1b C 135 MDVAIIGDSIVRHVRA-----NKVRTFCFPGARVKNISTQIPTIL----SPGAVVLHVGTNDTGLRQSEILKKDFRSLIETVRRTSPATQIIVSGPLPTYRRGNERFSRLLALNEWLITWCKEQKLLFANNWNLFWERPRLFRPDGLHPSRAGAELLSDNISRLLRT 301
                                   144     |   - |     164       174    |  184       194       204       214       224       234       244       254       264       274       284       294       
                                         150   156                    179  184                                                                                                                     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C1B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C1B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C1B)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4C1B)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3LG57_DANRE | Q3LG574c1a

(-) Related Entries Specified in the PDB File

4c1a COILED COIL DOMAIN OF THE ZFL2-1 ORF1 PROTEIN FROM THE ZEBRAFISH ZFL2-1 RETROTRANSPOSON