4C0S - JenaLib

Title :   MAMMALIAN TRANSLATION ELONGATION FACTOR EEF1A2

Authors :   T. Crepin, V. F. Shalak, A. D. Yaremchuk, D. O. Vlasenko, A. A. Mccarthy, B. S. Negrutskii, M. A. Tukalo, A. V. El'Skaya

Date :   07 Aug 13 (Deposition) - 27 Aug 14 (Release) - 25 Jan 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B

Keywords :   Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Crepin, A. Mccarthy, A. Negrutskii, V. F. Shalak, V. Tukalo, D. O. Vlasenko, A. D. Yaremchuk
Mammalian Translation Elongation Factor Eef1A2: X-Ray Structure And New Features Of Gdp/Gtp Exchange Mechanism In Higher Eukaryotes
Nucleic Acids Res. V. 42 12939 2014
PubMed-ID: 25326326 | Reference-DOI: 10.1093/NAR/GKU974

Compounds

Molecule 1 - ELONGATION FACTOR 1-ALPHA 2
	Chains	:	A, B
	Organism Common	:	RABBIT
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986
	Synonym	:	EF-1-ALPHA-2, EUKARYOTIC ELONGATION FACTOR 1 A-2, EEF1A-2, STATIN-S1
	Tissue	:	MUSCLE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Asymmetric/Biological Unit (4, 8)

No.	Name	Count	Type	Full Name
1	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SEP	2	Mod. Amino Acid	PHOSPHOSERINE
4	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:17 , SER A:18 , GLY A:19 , LYS A:20 , SER A:21 , THR A:22 , ASN A:153 , LYS A:154 , ASP A:156 , SER A:194 , GLY A:195 , TRP A:196 , MG A:501 , HOH A:2001	BINDING SITE FOR RESIDUE GDP A 500
2	AC2	SOFTWARE	ASP A:17 , GDP A:500	BINDING SITE FOR RESIDUE MG A 501
3	AC3	SOFTWARE	GLU A:203 , PRO A:204 , ASP B:17 , SER B:18 , GLY B:19 , LYS B:20 , SER B:21 , THR B:22 , ASN B:153 , LYS B:154 , ASP B:156 , SER B:194 , GLY B:195 , TRP B:196 , MG B:501	BINDING SITE FOR RESIDUE GDP B 500
4	AC4	SOFTWARE	ASP B:17 , GDP B:500	BINDING SITE FOR RESIDUE MG B 501

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Asymmetric/Biological Unit

No.	Residues
1	Glu A:159	-	Pro A:160
2	Ala A:281	-	Pro A:282
3	Gly A:449	-	Lys A:450
4	Glu B:159	-	Pro B:160
5	Ala B:281	-	Pro B:282

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	G_TR_1	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	EF1A2_RABIT	61-76	2	A:61-76 B:61-76

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:451
 aligned with EF1A2_RABIT | Q71V39 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:452
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
          EF1A2_RABIT     4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKSGGAGKVTKSA 455
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhh..-......hhhhhhhhhh........hhh.eee....eeeeee.....hhhhhhhh......eeeeee....hhhhhhhh..hhhhhhhhhhhhh...eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhh.eee.....................eee......eee.hhhhhhhhh....hhhhh..eeeeeeeeee...eeeeeee..........eeeee...eeeeeeeee.............eeeeeee..hhhhh....eeee........eeeeeeeeee......ee.....eeee..eeeeee.....................ee....eeeeeeee...........hhhh.eeeeee..eeeeeeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c0s A   4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEM-KGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYsEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPtRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKSGGAGKVTKSA 455
                                    13        23        33        43     | |53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     | 243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453  
                                                                        49 |                                                                                                             163-SEP                                                                     239-TPO                                                                                                                                                                                                                    
                                                                          51

Chain B from PDB  Type:PROTEIN  Length:442
 aligned with EF1A2_RABIT | Q71V39 from UniProtKB/Swiss-Prot  Length:463

    Alignment length:442
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  
          EF1A2_RABIT     4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYSEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKS 445
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhh.......hhh.eee...eeeeeee.....hhhhhhhh......eeeeeee...hhhhhhh....hhhhhhhhhhhh...eeeeeeehhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhh.eee.....................eee......eee.hhhhhhhh.....hhhhh...eeeeeeeee...eeeeeee..........eeeee...eeeeeeeee.............eeeeee............eeee........eeeeeeeeee.....ee......eeee..eeeeeeeeeeeeee......eeee....ee...eeeeeeee...........hhhh.eeeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------G_TR_1          --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c0s B   4 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYsEKRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPPtRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKS 445
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     | 243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443  
                                                                                                                                                                                         163-SEP                                                                     239-TPO

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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	Cis Peptide Bonds
		Ala A:281 - Pro A:282	[ RasMol ]
		Ala B:281 - Pro B:282	[ RasMol ]
		Glu A:159 - Pro A:160	[ RasMol ]
		Glu B:159 - Pro B:160	[ RasMol ]
		Gly A:449 - Lys A:450	[ RasMol ]

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