4BZX - JenaLib

Title :   STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN COMPLEX WITH AMPPNP AND APS

Authors :   O. Poyraz, B. Lohkamp, R. Schnell, G. Schneider

Date :   30 Jul 13 (Deposition) - 13 Aug 14 (Release) - 08 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Transferase, Sulfur Assimilation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Poyraz, K. Brunner, B. Lohkamp, H. Axelsson, L. G. J. Hammarstrom, R. Schnell, G. Schneider
Crystal Structures Of The Kinase Domain Of The Sulfate- Activating Complex In Mycobacterium Tuberculosis.
Plos One V. 10 21494 2015
PubMed-ID: 25807013 | Reference-DOI: 10.1371/JOURNAL.PONE.0121494

Compounds

Molecule 1 - BIFUNCTIONAL ENZYME CYSN/CYSC
	Chains	:	A, B
	EC Number	:	2.7.1.25
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET28APLUS
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 440-612
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773
	Synonym	:	APS KINASE, ATP ADENOSINE-5-PHOSPHOSULFATE 3-PHOSPHOTRANSFERASE, CYSC

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (6, 22)

Asymmetric Unit (6, 22)

No.	Name	Count	Type	Full Name
1	ADX	2	Ligand/Ion	ADENOSINE-5'-PHOSPHOSULFATE
2	ANP	2	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3	CIT	2	Ligand/Ion	CITRIC ACID
4	EDO	13	Ligand/Ion	1,2-ETHANEDIOL
5	MG	2	Ligand/Ion	MAGNESIUM ION
6	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (5, 11)

No.	Name	Count	Type	Full Name
1	ADX	1	Ligand/Ion	ADENOSINE-5'-PHOSPHOSULFATE
2	ANP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3	CIT	1	Ligand/Ion	CITRIC ACID
4	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (4, 9)

No.	Name	Count	Type	Full Name
1	ADX	1	Ligand/Ion	ADENOSINE-5'-PHOSPHOSULFATE
2	ANP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3	CIT	1	Ligand/Ion	CITRIC ACID
4	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
5	MG	-1	Ligand/Ion	MAGNESIUM ION
6	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Sites (22, 22)

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:452 , ASP A:480 , ARG A:483 , PHE A:492 , ARG A:497 , ASN A:500 , LEU A:501 , ALA A:522 , ILE A:523 , SER A:524 , PRO A:525 , LYS A:562 , LEU A:564 , HIS A:575 , PHE A:576 , THR A:577 , ANP A:1614 , EDO A:1621 , HOH A:2048 , HOH A:2062 , HOH A:2095	BINDING SITE FOR RESIDUE ADX A1613
02	AC2	SOFTWARE	LEU A:451 , SER A:452 , GLY A:453 , SER A:454 , GLY A:455 , LYS A:456 , SER A:457 , SER A:458 , ILE A:523 , ARG A:559 , PRO A:561 , LYS A:562 , ARG A:597 , ILE A:599 , GLN A:602 , ADX A:1613 , MG A:1624 , HOH A:2013 , HOH A:2015 , HOH A:2048 , HOH A:2060 , HOH A:2080 , ANP B:1614 , HOH B:2013	BINDING SITE FOR RESIDUE ANP A1614
03	AC3	SOFTWARE	PHE A:548 , ASP A:550 , THR A:551 , ARG A:585 , HOH A:2007 , HOH A:2067	BINDING SITE FOR RESIDUE EDO A1615
04	AC4	SOFTWARE	LEU A:468	BINDING SITE FOR RESIDUE EDO A1616
05	AC5	SOFTWARE	LYS A:470 , ALA A:495 , GLN A:604 , ILE A:607 , HOH A:2020 , HOH A:2094	BINDING SITE FOR RESIDUE EDO A1617
06	AC6	SOFTWARE	ARG A:502 , HIS A:506	BINDING SITE FOR RESIDUE EDO A1618
07	AC7	SOFTWARE	GLY A:443 , ILE A:472 , SER A:473 , GLY A:515 , LEU A:517 , HOH A:2021 , HOH A:2096	BINDING SITE FOR RESIDUE EDO A1619
08	AC8	SOFTWARE	ILE A:472 , MET A:494 , HIS A:575 , ASP A:580 , GLU A:611 , HOH A:2038	BINDING SITE FOR RESIDUE EDO A1620
09	AC9	SOFTWARE	ASP A:480 , ARG A:483 , HIS A:484 , ADX A:1613	BINDING SITE FOR RESIDUE EDO A1621
10	BC1	SOFTWARE	HIS A:506 , THR A:509 , VAL A:536 , HOH A:2097 , GLY B:485 , LEU B:486	BINDING SITE FOR RESIDUE PEG A1622
11	BC2	SOFTWARE	ALA A:527 , ARG A:530 , ALA A:531 , ARG A:534 , GLU A:546 , PRO A:586 , LYS A:587 , ASN A:588 , PRO A:589	BINDING SITE FOR RESIDUE CIT A1623
12	BC3	SOFTWARE	SER A:457 , ANP A:1614 , HOH A:2013 , HOH A:2014 , HOH A:2015	BINDING SITE FOR RESIDUE MG A1624
13	BC4	SOFTWARE	ARG B:483 , PHE B:492 , ARG B:497 , ASN B:500 , LEU B:501 , ALA B:522 , ILE B:523 , SER B:524 , PRO B:525 , LYS B:562 , LEU B:564 , HIS B:575 , PHE B:576 , THR B:577 , ANP B:1614 , HOH B:2022 , HOH B:2074	BINDING SITE FOR RESIDUE ADX B1613
14	BC5	SOFTWARE	ANP A:1614 , LEU B:451 , SER B:452 , GLY B:453 , SER B:454 , GLY B:455 , LYS B:456 , SER B:457 , SER B:458 , ILE B:523 , ARG B:559 , PRO B:561 , LYS B:562 , ARG B:597 , ILE B:599 , GLN B:602 , ADX B:1613 , MG B:1622 , HOH B:2008 , HOH B:2009 , HOH B:2013	BINDING SITE FOR RESIDUE ANP B1614
15	BC6	SOFTWARE	THR A:594 , HOH A:2079 , PHE B:548 , PRO B:586 , LYS B:587 , PRO B:589 , ARG B:592 , EDO B:1618	BINDING SITE FOR RESIDUE EDO B1615
16	BC7	SOFTWARE	HIS B:506 , THR B:509 , VAL B:536 , ASP B:539 , ALA B:540	BINDING SITE FOR RESIDUE EDO B1616
17	BC8	SOFTWARE	LEU B:451 , PHE B:548 , ASP B:550 , THR B:551 , ARG B:585 , HOH B:2003 , HOH B:2056	BINDING SITE FOR RESIDUE EDO B1617
18	BC9	SOFTWARE	ASP A:550 , ARG A:585 , THR A:594 , ARG B:585 , EDO B:1615	BINDING SITE FOR RESIDUE EDO B1618
19	CC1	SOFTWARE	GLY B:491 , PHE B:492 , SER B:493 , ASP B:496 , GLU B:611 , HOH B:2030	BINDING SITE FOR RESIDUE EDO B1619
20	CC2	SOFTWARE	GLU B:464 , TYR B:475 , VAL B:476	BINDING SITE FOR RESIDUE EDO B1620
21	CC3	SOFTWARE	ALA B:527 , ARG B:530 , ARG B:534 , GLU B:546 , PRO B:586 , LYS B:587 , ASN B:588 , HOH B:2076	BINDING SITE FOR RESIDUE CIT B1621
22	CC4	SOFTWARE	SER B:457 , ANP B:1614 , HOH B:2008 , HOH B:2009 , HOH B:2010	BINDING SITE FOR RESIDUE MG B1622

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:173
 aligned with CYSNC_MYCTO | P9WNM4 from UniProtKB/Swiss-Prot  Length:614

    Alignment length:173
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609   
          CYSNC_MYCTO   440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhhh...eee.hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhh..hhhhhhhh....................eee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bzx A 440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609

Chain A from PDB  Type:PROTEIN  Length:173
 aligned with CYSNC_MYCTU | P9WNM5 from UniProtKB/Swiss-Prot  Length:614

    Alignment length:173
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609   
          CYSNC_MYCTU   440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhhh...eee.hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhh..hhhhhhhh....................eee....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bzx A 440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with CYSNC_MYCTO | P9WNM4 from UniProtKB/Swiss-Prot  Length:614

    Alignment length:173
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609   
          CYSNC_MYCTO   440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhhh...eee.hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhh..hhhhhhhh....................eee....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bzx B 440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with CYSNC_MYCTU | P9WNM5 from UniProtKB/Swiss-Prot  Length:614

    Alignment length:173
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609   
          CYSNC_MYCTU   440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhhh...eee.hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhh..hhhhhhhh....................eee....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bzx B 440 PPRGKTVWFTGLSGSGKSSVAMLVERKLLEKGISAYVLDGDNLRHGLNADLGFSMADRAENLRRLSHVATLLADCGHLVLVPAISPLAEHRALARKVHADAGIDFFEVFCDTPLQDCERRDPKGLYAKARAGEITHFTGIDSPYQRPKNPDLRLTPDRSIDEQAQEVIDLLES 612
                                   449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

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Gene Ontology (22, 37)

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Related Entries Specified in the PDB File

4bzp	STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN COMPLEX WITH ADP
4bzq	STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN COMPLEX WITH ADP AND APS

Description