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(-) Description

Title :  STRUCTURAL CHARACTERIZATION USING SULFUR-SAD OF THE CYTOPLASMIC DOMAIN OF BURKHOLDERIA PSEUDOMALLEI PILO2BP, AN ACTIN-LIKE PROTEIN COMPONENT OF A TYPE IVB R64-DERIVATIVE PILUS MACHINERY.
 
Authors :  P. Lassaux, B. A. Manjasetty, O. Conchillo-Sole, D. Yero, L. Gourlay, L. Perletti, X. Daura, H. Belrhali, M. Bolognesi
Date :  22 Jul 13  (Deposition) - 23 Apr 14  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Protein, Sulfur-Sad, Type Ivb Biogenesis Pilus, Pfam Family Pf06864. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Lassaux, O. Conchillo-Sole, B. A. Manjasetty, D. Yero, L. Perletti H. Belrhali, X. Daura, L. J. Gourlay, M. Bolognesi
Redefining The Pf06864 Pfam Family Based On Burkholderia Pseudomallei Pilo2Bp S-Sad Crystal Structure.
Plos One V. 9 94981 2014
PubMed-ID: 24728008  |  Reference-DOI: 10.1371/JOURNAL.PONE.0094981

(-) Compounds

Molecule 1 - PUTATIVE TYPE IV PILUS BIOSYNTHESIS PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET151/TOPO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector Type: PLASMID
    Fragment: PILIN ACCESSORY PROTEIN, RESIDUES 1-192
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 272560
    Strain: K96243
    Synonym: N-PILO2BP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1K7Ligand/IonPOTASSIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:19 , GLN A:20 , PRO A:119 , K A:1190 , K A:1193BINDING SITE FOR RESIDUE K A1188
2AC2SOFTWARESER A:23 , MET A:118 , ASN A:120 , HOH A:2053BINDING SITE FOR RESIDUE K A1189
3AC3SOFTWAREGLN A:20 , SER A:21 , PRO A:119 , K A:1188 , K A:1192BINDING SITE FOR RESIDUE K A1190
4AC4SOFTWAREVAL A:14 , SER A:70 , LEU A:71 , GLY A:72 , ASP A:122BINDING SITE FOR RESIDUE K A1191
5AC5SOFTWAREPHE A:18 , GLU A:31 , K A:1190BINDING SITE FOR RESIDUE K A1192
6AC6SOFTWARESER A:21 , K A:1188 , HOH A:2016BINDING SITE FOR RESIDUE K A1193
7AC7SOFTWAREARG A:24 , ARG A:50 , ARG A:113 , GLY A:141BINDING SITE FOR RESIDUE K A1194

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BZ0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BZ0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BZ0)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
 aligned with Q63JW5_BURPS | Q63JW5 from UniProtKB/TrEMBL  Length:432

    Alignment length:184
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183    
         Q63JW5_BURPS     4 QVIQIGRQRFVGGLFWQSLSRRNELRAEAVELAKKLKFDLMVLRIDRGVAAAGYANTRDGFAPGHLSLGAMVSRAIALEGAFYNGRRQPAPNWLGAFALPDGRWAYFAVRDHAFMPNGDWVGSREEALERLHTDYAWGGWNVVIGEPELERQGFQNFQPKRLDDLLPRRGGRPRTERWWALRPV 187
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeee...eeee.....hhhhhhhhhhhhhh..eeeeeee..eeeeeeehhhhh.....eehhhhhhhhhhhhheee..eee....eeeeee.....eeeeeee..eeeeeeeeeehhhhhhhhhhhhhh.....eeeehhhhhhhh...eee.hhhhh.--------.hhhh..ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bz0 A   4 QVIQIGRQRFVGGLFWQSLSRRNELRAEAVELAKKLKFDLMVLRIDRGVAAAGYANTRDGFAPGHLSLGAMVSRAIALEGAFYNGRRQPAPNWLGAFALPDGRWAYFAVRDHAFMPNGDWVGSREEALERLHTDYAWGGWNVVIGEPELERQGFQNFQPKRLDDLL--------TERWWALRPV 187
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163     |   -    |  183    
                                                                                                                                                                                               169      178
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BZ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BZ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BZ0)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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        Q63JW5_BURPS | Q63JW5: 4byz

(-) Related Entries Specified in the PDB File

4byz STRUCTURAL CHARACTERIZATION USING SULFUR-SAD OF THE CYTOPLASMIC DOMAIN OF BURKHOLDERIA PSEUDOMALLEI PILO2BP, AN ACTIN-LIKE PROTEIN COMPONENT OF A TYPE IVB R64- DERIVATIVE PILUS MACHINERY.