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(-) Description

Title :  CRYSTAL STRUCTURE OF ATP BINDING DOMAIN OF AGRC FROM STAPHYLOCOCCUS AUREUS
 
Authors :  S. K. Srivastava, K. Rajasree, B. Gopal
Date :  12 Jul 13  (Deposition) - 04 Jun 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Atp-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Srivastava, K. Rajasree, A. Fasim, G. Arakere, B. Gopal
Influence Of The Agrc-Agra Complex In The Response Time Of Staphylococcus Aureus Quorum Sensing
J. Bacteriol. V. 196 2876 2014
PubMed-ID: 24858185  |  Reference-DOI: 10.1128/JB.01530-14

(-) Compounds

Molecule 1 - ACCESSORY GENE REGULATOR PROTEIN C
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: STAR
    Expression System Vector: PET22B
    Expression System Vector Type: PLASMID
    Fragment: ATP BINDING DOMAIN, RESIDUES 278-430
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 93062
    Strain: COL
    Synonym: AGRC

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL2Ligand/IonGLYCEROL
3MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:287 , PRO A:316 , LYS A:401 , ASP A:405 , HOH A:2011BINDING SITE FOR RESIDUE GOL A1431
2AC2SOFTWARESER A:321 , ILE A:322 , LEU A:324 , MET A:326 , LEU A:329 , HOH A:2017BINDING SITE FOR RESIDUE GOL A1432
3AC3SOFTWAREILE A:285 , THR A:298 , ILE A:327 , HOH A:2031BINDING SITE FOR RESIDUE MPD A1435
4AC4SOFTWARELEU A:282 , GLY A:284 , GLU A:286 , PHE A:382 , LEU A:412 , THR A:414 , HOH A:2002 , HOH A:2041BINDING SITE FOR RESIDUE MPD A1433
5AC5SOFTWAREMET A:307 , SER A:344 , THR A:345 , ILE A:347 , PRO A:350BINDING SITE FOR RESIDUE ACT A1434

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BXI)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:146
 aligned with A0A0H2WWL2_S | A0A0H2WWL2 from UniProtKB/TrEMBL  Length:430

    Alignment length:153
                                   287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   
         A0A0H2WWL2_S   278 NAIKLNGIENLKVREIKGLITAKILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESENSVTFIVMNKCADDIPRIHELFQESFSTKGEGRGLGLSTLKEIADNADNVLLDTIIENGFFIQKVEIINN 430
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeehhhh..hhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhh........eeeeeee...eeeeeeeee...hhhhhhhhhhhhhh-------.hhhhhhhhhhhh..eeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bxi A 278 NAIKLNGIENLKVREIKGLITAKILRAQEMNIPISIEIPDEVSSINLNMIDLSRSIGIILDNAIEASTEIDDPIIRVAFIESENSVTFIVMNKCADDIPRIHELFQESFS-------LGLSTLKEIADNADNVLLDTIIENGFFIQKVEIINN 430
                                   287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   
                                                                                                                                       387     395
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BXI)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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