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(-) Description

Title :  CRYSTAL STRUCTURE OF CHORISMATASE AT 1.08 ANGSTROM RESOLUTION.
 
Authors :  P. Juneja, F. Hubrich, K. Diederichs, W. Welte, J. N. Andexer
Date :  28 May 13  (Deposition) - 18 Sep 13  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Yjgf Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Juneja, F. Hubrich, K. Diederichs, W. Welte, J. N. Andexer
Mechanistic Implications For The Chorismatase Fkbo Based On The Crystal Structure.
J. Mol. Biol. V. 426 105 2014
PubMed-ID: 24036425  |  Reference-DOI: 10.1016/J.JMB.2013.09.006

(-) Compounds

Molecule 1 - FKBO
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A-FKBO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RP-PL1SL2
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES HYGROSCOPICUS SUBSP. ASCOMYCETICUS
    Organism Taxid: 132248
    Synonym: CHORISMATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
13EB1Ligand/Ion3-(2-CARBOXYETHYL)BENZOIC ACID
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:155 , ARG A:162 , ALA A:179 , THR A:180 , GLY A:181 , TYR A:215 , PHE A:226 , ARG A:228 , ALA A:244 , ILE A:248 , GLU A:338 , HOH A:2377 , HOH A:2467BINDING SITE FOR RESIDUE 3EB A1345
2CHMAUTHORARG A:162 , TYR A:215 , PHE A:226 , ARG A:228 , GLU A:338SITE FOR CHORISMATE BINDING.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BPS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:220 -Pro A:221

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BPS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BPS)

(-) Exons   (0, 0)

(no "Exon" information available for 4BPS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
 aligned with FKBO_STRHY | Q9KID9 from UniProtKB/Swiss-Prot  Length:344

    Alignment length:331
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343 
           FKBO_STRHY    14 SISVTAPYCRFEKTGSPDLEGDETVLGLIEHGTGHTDVSLVDGAPRTAVHTTTRDDEAFTEVWHAQRPVESGMDNGIAWARTDAYLFGVVRTGESGRYADATAALYTNVFQLTRSLGYPLLARTWNYVSGINTTNADGLEVYRDFCVGRAQALDEGGIDPATMPAATGIGAHGGGITCVFLAARGGVRINIENPAVLTAHHYPTTYGPRPPVFARATWLGPPEGGRLFISATAGILGHRTVHHGDVTGQCEVALDNMARVIGAENLRRHGVQRGHVLADVDHLKVYVRRREDLDTVRRVCAARLSSTAAVALLHTDIAREDLLVEIEGMVA 344
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee............eeeeeee.......eee..eeeeee....hhhhheeeeee.....eeeee..eeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..........hhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee....eeeeeeee....eeee......hhhhhhhhhh........eeee......eeeeeeee.ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhheeeeeee.hhhhhhhhhhhhhh.......eeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bps A  14 SISVTAPYCRFEKTGSPDLEGDETVLGLIEHGTGHTDVSLVDGAPRTAVHTTTRDDEAFTEVWHAQRPVESGmDNGIAWARTDAYLFGVVRTGESGRYADATAALYTNVFQLTRSLGYPLLARTWNYVSGINTTNADGLEVYRDFCVGRAQALDEGGIDPATmPAATGIGAHGGGITCVFLAARGGVRINIENPAVLTAHHYPTTYGPRPPVFARATWLGPPEGGRLFISATAGILGHRTVHHGDVTGQCEVALDNmARVIGAENLRRHGVQRGHVLADVDHLKVYVRRREDLDTVRRVCAARLSSTAAVALLHTDIAREDLLVEIEGmVA 344
                                    23        33        43        53        63        73        83  |     93       103       113       123       133       143       153       163       173  |    183       193       203       213       223       233       243       253       263      |273       283       293       303       313       323       333       343 
                                                                                                   86-MSE                                                                                   176-MSE                                                                                       270-MSE                                                                 342-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BPS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BPS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BPS)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FKBO_STRHY | Q9KID9)
molecular function
    GO:0016803    ether hydrolase activity    Catalysis of the hydrolysis of an ether bond, -O-.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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