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(-) Description

Title :  CRYSTAL STRUCTURE OF ARGININE DEIMINASE FROM GROUP A STREPTOCOCCUS
 
Authors :  A. Henningham, D. J. Ericsson, K. Langer, L. Casey, B. Jovcevski, G. S. C J. A. Aquilina, M. R. Batzloff, B. Kobe, M. J. Walker
Date :  20 May 13  (Deposition) - 21 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  F,G  (1x)
Biol. Unit 4:  D (1x),E (1x)
Biol. Unit 5:  D (1x),E (1x)
Keywords :  Hydrolase, Vaccine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Henningham, D. J. Ericsson, K. Langer, L. W. Casey, B. Jovcevski, G. S. Chhatwal, J. A. Aquilina, M. R. Batzloff, B. Kobe, M. J. Walker
Structure-Informed Design Of An Enzymatically Inactive Vaccine Component For Group A Streptococcus.
Mbio V. 4 2013
PubMed-ID: 23919999  |  Reference-DOI: 10.1128/MBIO.00509-13

(-) Compounds

Molecule 1 - ARGININE DEIMINASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.5.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET151
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1314
    Other Details: GROUP A STREPTOCOCCUS
    Strain: MGAS5005
    Synonym: ADI, ARGININE DIHYDROLASE, AD, STREPTOCOCCAL ACID GLYCOPROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A      H
Biological Unit 2 (1x):  BC     
Biological Unit 3 (1x):      FG 
Biological Unit 4 (1x):    D (1x)E (1x)   
Biological Unit 5 (1x):    D (1x)E (1x)   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1PG41Ligand/IonTETRAETHYLENE GLYCOL
2PGE2Ligand/IonTRIETHYLENE GLYCOL
3SO416Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1PG4-1Ligand/IonTETRAETHYLENE GLYCOL
2PGE1Ligand/IonTRIETHYLENE GLYCOL
3SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1PG4-1Ligand/IonTETRAETHYLENE GLYCOL
2PGE-1Ligand/IonTRIETHYLENE GLYCOL
3SO44Ligand/IonSULFATE ION
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
1PG41Ligand/IonTETRAETHYLENE GLYCOL
2PGE1Ligand/IonTRIETHYLENE GLYCOL
3SO44Ligand/IonSULFATE ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1PG4-1Ligand/IonTETRAETHYLENE GLYCOL
2PGE-1Ligand/IonTRIETHYLENE GLYCOL
3SO42Ligand/IonSULFATE ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1PG4-1Ligand/IonTETRAETHYLENE GLYCOL
2PGE-1Ligand/IonTRIETHYLENE GLYCOL
3SO42Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:367 , ASN A:368 , ARG A:369 , ILE A:387 , HIS A:388 , GLY A:389 , SER A:390 , PHE H:46BINDING SITE FOR RESIDUE SO4 A 420
02AC2SOFTWAREGLY A:100 , ARG A:101 , GLY A:142 , THR A:144 , ASP A:145 , GLU D:246BINDING SITE FOR RESIDUE SO4 A 421
03AC3SOFTWARELEU A:71 , ASN A:160 , LEU A:161 , PHE A:163 , THR A:164 , PRO A:167 , PHE A:168 , ARG A:185 , GLU A:188 , THR A:189 , GLY A:192BINDING SITE FOR RESIDUE PGE A 422
04AC4SOFTWARETYR B:367 , ASN B:368 , ARG B:369 , ILE B:387 , HIS B:388 , GLY B:389 , SER B:390 , PHE C:46BINDING SITE FOR RESIDUE SO4 B 420
05AC5SOFTWAREGLY B:100 , ARG B:101 , GLY B:142 , LEU B:143 , THR B:144 , ASP B:145 , GLU G:246BINDING SITE FOR RESIDUE SO4 B 421
06AC6SOFTWARETYR C:367 , ASN C:368 , ARG C:369 , ILE C:387 , HIS C:388 , GLY C:389 , SER C:390BINDING SITE FOR RESIDUE SO4 C 420
07AC7SOFTWAREGLY C:100 , ARG C:101 , LEU C:143 , THR C:144 , ASP C:145 , GLU F:246BINDING SITE FOR RESIDUE SO4 C 421
08AC8SOFTWARETYR D:367 , ASN D:368 , ARG D:369 , ILE D:387 , HIS D:388 , GLY D:389 , SER D:390 , PHE E:46BINDING SITE FOR RESIDUE SO4 D 420
09AC9SOFTWAREGLU A:246 , GLY D:100 , ARG D:101 , GLY D:142 , LEU D:143 , THR D:144 , ASP D:145BINDING SITE FOR RESIDUE SO4 D 421
10BC1SOFTWAREPHE D:46 , TYR E:367 , ASN E:368 , ARG E:369 , ILE E:387 , HIS E:388 , GLY E:389 , SER E:390BINDING SITE FOR RESIDUE SO4 E 420
11BC2SOFTWAREGLY E:100 , ARG E:101 , GLY E:142 , LEU E:143 , THR E:144 , ASP E:145 , GLU H:246BINDING SITE FOR RESIDUE SO4 E 421
12BC3SOFTWARETYR F:367 , ASN F:368 , ARG F:369 , ILE F:387 , HIS F:388 , GLY F:389 , SER F:390 , HOH F:2056BINDING SITE FOR RESIDUE SO4 F 420
13BC4SOFTWAREGLU C:246 , GLY F:100 , ARG F:101 , GLY F:142 , LEU F:143 , THR F:144 , ASP F:145BINDING SITE FOR RESIDUE SO4 F 421
14BC5SOFTWAREGLU F:29 , ASP F:43 , ILE F:44 , PRO F:45 , PHE F:46 , LEU F:47 , ARG F:394 , HOH F:2062 , ARG G:347 , ASN G:351 , ARG G:369 , THR G:371 , VAL G:393 , ARG G:396BINDING SITE FOR RESIDUE PG4 F 422
15BC6SOFTWAREALA F:96 , ASN F:97 , ALA F:154 , ASP F:156 , PRO F:157 , THR F:184 , ARG F:187BINDING SITE FOR RESIDUE PGE F 423
16BC7SOFTWAREHOH F:2014 , TYR G:367 , ASN G:368 , ARG G:369 , ILE G:387 , HIS G:388 , GLY G:389 , SER G:390BINDING SITE FOR RESIDUE SO4 G 420
17BC8SOFTWAREGLU B:246 , GLY G:100 , ARG G:101 , GLY G:142 , LEU G:143 , THR G:144 , ASP G:145BINDING SITE FOR RESIDUE SO4 G 421
18BC9SOFTWAREHOH A:2014 , TYR H:367 , ASN H:368 , ARG H:369 , ILE H:387 , HIS H:388 , GLY H:389 , SER H:390BINDING SITE FOR RESIDUE SO4 H 420
19CC1SOFTWAREGLU E:246 , GLY H:100 , ARG H:101 , GLY H:142 , LEU H:143 , THR H:144 , ASP H:145BINDING SITE FOR RESIDUE SO4 H 421

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BOF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BOF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BOF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BOF)

(-) Exons   (0, 0)

(no "Exon" information available for 4BOF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:408
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403        
           ARCA_STRPY     4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee......hhhhhhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhhhh.....eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeeee....eeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bof A   4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403        


Chain B from PDB  Type:PROTEIN  Length:411
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 
           ARCA_STRPY     1 MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee..........hhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhhhh.....eeeeee........hhhh.eeeee..eeee.hhhh...eeeeeeee..eeeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bof B   1 MTAQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410 


Chain C from PDB  Type:PROTEIN  Length:409
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:409
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
           ARCA_STRPY     3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee....hhhhhhhhhhhhhhhhhh.........eee........hhh.eee....eeeeee....hhhhhhhhhhhhhhhh....eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeee.hhhh.eeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bof C   3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         


Chain D from PDB  Type:PROTEIN  Length:409
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:409
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
           ARCA_STRPY     3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee....hhhhhhhhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhhhhh....eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeeeee..eeeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bof D   3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         


Chain E from PDB  Type:PROTEIN  Length:406
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:406
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      
           ARCA_STRPY     6 PIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofe_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee.......hhhhhhhhhhhhhhh....................hhh.ee.....eeeeee....hhhhhhhhhhhhhhh.....eeeeee.............eeeee..eeee.hhhhh..eeeeeeee..eeeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bof E   6 PIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405      


Chain F from PDB  Type:PROTEIN  Length:409
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:409
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         
           ARCA_STRPY     3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4boff_ F: automated matches                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee......hhhhhhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhh.......eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeeee....eeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bof F   3 AQTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402         


Chain G from PDB  Type:PROTEIN  Length:408
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:408
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403        
           ARCA_STRPY     4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofg_ G: automated matches                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee....hhhhhhhhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhhhh.....eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeeeee..eeeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bof G   4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403        


Chain H from PDB  Type:PROTEIN  Length:408
 aligned with ARCA_STRPY | P0C0B3 from UniProtKB/Swiss-Prot  Length:411

    Alignment length:408
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403        
           ARCA_STRPY     4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
               SCOP domains d4bofh_ H: automated matches                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeeee..........hhhhh.........hhhhhhhhhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhee.hhh...hhhhhhhhhhh.....eee..hhhhhh....eeee..eeee.......hhhhhhhhhhhhhhh....................hhh.eee....eeeeee....hhhhhhhhhhhhhhh.....eeeeee........hhhh.eeeee..eeee.hhhhh..eeeeeeee..eeeeeee..hhhhhhhhhhh....eeee....hhhhhhhhhhh.....eeee..eeeee..hhhhhhhhhhh..eeeee...hhhhhh.......eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bof H   4 QTPIHVYSEIGKLKKVLLHRPGKEIENLMPDYLERLLFDDIPFLEDAQKEHDAFAQALRDEGIEVLYLETLAAESLVTPEIREAFIDEYLSEANIRGRATKKAIRELLMAIEDNQELIEKTMAGVQKSELPEIPASEKGLTDLVESNYPFAIDPMPNLYFTRDPFATIGTGVSLNHMFSETRNRETLYGKYIFTHHPIYGGGKVPMVYDRNETTRIEGGDELVLSKDVLAVGISQRTDAASIEKLLVNIFKQNLGFKKVLAFEFANNRKFMHLDTVFTMVDYDKFTIHPEIEGDLRVYSVTYDNEELHIVEEKGDLAELLAANLGVEKVDLIRCGGDNLVAAGREQWNDGSNTLTIAPGVVVVYNRNTITNAILESKGLKLIKIHGSELVRGRGGPRCMSMPFEREDI 411
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BOF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BOF)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ARCA_STRPY | P0C0B3)
molecular function
    GO:0016990    arginine deiminase activity    Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0019547    arginine catabolic process to ornithine    The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine.
    GO:0006525    arginine metabolic process    The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0018101    protein citrullination    The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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