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(-) Description

Title :  SHORT-CHAIN DEHYDROGENASE FROM SPHINGOBIUM YANOIKUYAE IN COMPLEX WITH NADPH
 
Authors :  H. Man, K. Kedziora, I. Lavandera-Garcia, V. Gotor-Fernandez, G. Grog
Date :  10 May 13  (Deposition) - 19 Mar 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  H,I  (1x)
Biol. Unit 5:  G,J  (1x)
Keywords :  Oxidoreductase, Biocatalyst (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Man, K. Kedziora, J. Kulig, A. Frank, I. Lavandera, V. Gotor-Fernandez, D. Rother, S. Hart, J. P. Turkenburg, G. Grogan
Structures Of Alcohol Dehydrogenases From Ralstonia And Sphingobium Spp. Reveal The Molecular Basis For Their Recognition Of 'Bulky-Bulky' Ketones
Top. Catal. V. 57 356 2014
PubMed: search  |  Reference-DOI: 10.1007/S11244-013-0191-2

(-) Compounds

Molecule 1 - SHORT-CHAIN DEHYDROGENASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 1.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETYSBLIC-3C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: SPHINGOBIUM YANOIKUYAE
    Organism Taxid: 13690
    Synonym: ALCOHOL DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): AB        
Biological Unit 2 (1x):   CD      
Biological Unit 3 (1x):     EF    
Biological Unit 4 (1x):        HI 
Biological Unit 5 (1x):       G  J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1NAP10Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:11 , SER A:13 , SER A:14 , GLY A:15 , ILE A:16 , ALA A:35 , ARG A:36 , ASP A:37 , ALA A:61 , ASP A:62 , LEU A:63 , ASN A:88 , GLY A:90 , LEU A:111 , ILE A:138 , GLY A:139 , SER A:140 , TYR A:153 , LYS A:157 , PRO A:183 , ALA A:184 , ALA A:185 , THR A:186 , THR A:188 , GLU A:189 , ILE A:190 , TRP A:191 , ARG A:193 , HOH A:2002 , HOH A:2003 , HOH A:2007 , HOH A:2028 , HOH A:2049BINDING SITE FOR RESIDUE NAP A 300
02AC2SOFTWAREGLY B:11 , SER B:13 , SER B:14 , GLY B:15 , ILE B:16 , ARG B:36 , ASP B:37 , ALA B:61 , ASP B:62 , LEU B:63 , ASN B:88 , GLY B:90 , LEU B:111 , ILE B:138 , GLY B:139 , SER B:140 , TYR B:153 , LYS B:157 , PRO B:183 , ALA B:184 , ALA B:185 , THR B:186 , THR B:188 , GLU B:189 , ILE B:190 , TRP B:191 , ARG B:193 , HOH B:2002 , HOH B:2003 , HOH B:2005 , HOH B:2020 , HOH B:2022BINDING SITE FOR RESIDUE NAP B 300
03AC3SOFTWAREGLY C:11 , ALA C:12 , SER C:13 , SER C:14 , GLY C:15 , ILE C:16 , ARG C:36 , ASP C:37 , ALA C:61 , ASP C:62 , LEU C:63 , ASN C:88 , ALA C:89 , GLY C:90 , LEU C:111 , ILE C:138 , GLY C:139 , SER C:140 , TYR C:153 , LYS C:157 , PRO C:183 , ALA C:184 , ALA C:185 , THR C:186 , THR C:188 , GLU C:189 , ILE C:190 , TRP C:191 , ARG C:193 , HOH C:2004 , HOH C:2021 , HOH C:2040BINDING SITE FOR RESIDUE NAP C 300
04AC4SOFTWAREGLY D:11 , SER D:13 , SER D:14 , GLY D:15 , ILE D:16 , ALA D:35 , ARG D:36 , ASP D:37 , ALA D:61 , ASP D:62 , LEU D:63 , ASN D:88 , GLY D:90 , LEU D:111 , ILE D:138 , GLY D:139 , SER D:140 , TYR D:153 , LYS D:157 , PRO D:183 , ALA D:184 , ALA D:185 , THR D:186 , THR D:188 , GLU D:189 , ILE D:190 , TRP D:191 , ARG D:193 , HOH D:2001 , HOH D:2002 , HOH D:2006BINDING SITE FOR RESIDUE NAP D 300
05AC5SOFTWAREGLY E:11 , ALA E:12 , SER E:13 , SER E:14 , GLY E:15 , ILE E:16 , ARG E:36 , ASP E:37 , ALA E:61 , ASP E:62 , LEU E:63 , ASN E:88 , ALA E:89 , GLY E:90 , LEU E:111 , ILE E:138 , GLY E:139 , SER E:140 , TYR E:153 , LYS E:157 , PRO E:183 , ALA E:184 , ALA E:185 , THR E:186 , THR E:188 , GLU E:189 , ILE E:190 , TRP E:191 , ARG E:193 , HOH E:2005 , HOH E:2006 , HOH E:2023 , HOH E:2025 , HOH E:2050BINDING SITE FOR RESIDUE NAP E 300
06AC6SOFTWAREGLY F:11 , ALA F:12 , SER F:13 , SER F:14 , GLY F:15 , ILE F:16 , ALA F:35 , ARG F:36 , ASP F:37 , ALA F:61 , ASP F:62 , LEU F:63 , ASN F:88 , GLY F:90 , LEU F:111 , GLY F:139 , SER F:140 , TYR F:153 , LYS F:157 , PRO F:183 , ALA F:184 , ALA F:185 , THR F:186 , THR F:188 , GLU F:189 , ILE F:190 , TRP F:191 , ARG F:193 , HOH F:2002 , HOH F:2010 , HOH F:2012 , HOH F:2023BINDING SITE FOR RESIDUE NAP F 300
07AC7SOFTWAREGLY G:11 , ALA G:12 , SER G:13 , SER G:14 , GLY G:15 , ILE G:16 , ARG G:36 , ASP G:37 , ALA G:61 , ASP G:62 , LEU G:63 , ASN G:88 , ALA G:89 , GLY G:90 , LEU G:111 , ILE G:138 , GLY G:139 , SER G:140 , TYR G:153 , LYS G:157 , PRO G:183 , ALA G:184 , ALA G:185 , THR G:186 , THR G:188 , GLU G:189 , ILE G:190 , TRP G:191 , ARG G:193 , HOH G:2002 , HOH G:2003 , HOH G:2006 , HOH G:2007 , HOH G:2012BINDING SITE FOR RESIDUE NAP G 300
08AC8SOFTWAREGLY H:11 , SER H:13 , SER H:14 , GLY H:15 , ILE H:16 , ARG H:36 , ASP H:37 , ALA H:61 , ASP H:62 , LEU H:63 , ASN H:88 , ALA H:89 , GLY H:90 , LEU H:111 , ILE H:138 , GLY H:139 , SER H:140 , TYR H:153 , LYS H:157 , PRO H:183 , ALA H:184 , ALA H:185 , THR H:186 , THR H:188 , GLU H:189 , ILE H:190 , TRP H:191 , ARG H:193 , HOH H:2003 , HOH H:2005 , HOH H:2006BINDING SITE FOR RESIDUE NAP H 300
09AC9SOFTWAREGLY I:11 , SER I:13 , SER I:14 , GLY I:15 , ILE I:16 , ALA I:35 , ARG I:36 , ASP I:37 , ALA I:61 , ASP I:62 , LEU I:63 , ASN I:88 , GLY I:90 , LEU I:111 , ILE I:138 , GLY I:139 , SER I:140 , TYR I:153 , LYS I:157 , PRO I:183 , ALA I:184 , THR I:186 , THR I:188 , GLU I:189 , ILE I:190 , TRP I:191BINDING SITE FOR RESIDUE NAP I 300
10BC1SOFTWAREGLY J:11 , SER J:13 , SER J:14 , GLY J:15 , ILE J:16 , ALA J:35 , ARG J:36 , ASP J:37 , ALA J:61 , ASP J:62 , LEU J:63 , ASN J:88 , GLY J:90 , LEU J:111 , ILE J:138 , GLY J:139 , SER J:140 , TYR J:153 , LYS J:157 , PRO J:183 , ALA J:184 , THR J:186 , THR J:188 , GLU J:189 , ILE J:190 , TRP J:191BINDING SITE FOR RESIDUE NAP J 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BMV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BMV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BMV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BMV)

(-) Exons   (0, 0)

(no "Exon" information available for 4BMV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252      
         B9U359_SPHYA     3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY 258
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv A   3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY 258
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252      


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:257
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       
         B9U359_SPHYA     3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv B   3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       


Chain C from PDB  Type:PROTEIN  Length:258
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251        
         B9U359_SPHYA     2 TTLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bmv C   2 TTLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251        


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:257
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       
         B9U359_SPHYA     3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv D   3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:257
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       
         B9U359_SPHYA     3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhhh.hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv E   3 TLPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       


Chain F from PDB  Type:PROTEIN  Length:256
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
         B9U359_SPHYA     4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv F   4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      


Chain G from PDB  Type:PROTEIN  Length:256
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
         B9U359_SPHYA     4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv G   4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      


Chain H from PDB  Type:PROTEIN  Length:256
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
         B9U359_SPHYA     4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh..hhhhh....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv H   4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      


Chain I from PDB  Type:PROTEIN  Length:254
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:255
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253     
         B9U359_SPHYA     4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY 258
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh....-......hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv I   4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDV-TLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY 258
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    | |203       213       223       233       243       253     
                                                                                                                                                                                                                            198 |                                                          
                                                                                                                                                                                                                              200                                                          


Chain J from PDB  Type:PROTEIN  Length:255
 aligned with B9U359_SPHYA | B9U359 from UniProtKB/TrEMBL  Length:262

    Alignment length:256
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      
         B9U359_SPHYA     4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.......hhhhhh....-......hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bmv J   4 LPTVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDV-TLPEVMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRYR 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193    | |203       213       223       233       243       253      
                                                                                                                                                                                                                            198 |                                                           
                                                                                                                                                                                                                              200
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Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (B9U359_SPHYA | B9U359)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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(-) Related Entries Specified in the PDB File

4bmn APO STRUCTURE OF SHORT-CHAIN ALCOHOL DEHYDROGENASE FROM RALSTONIA SP. DSM 6428
4bms SHORT CHAIN ALCOHOL DEHYDROGENASE FROM RALSTONIA SP. DSM 6428 IN COMPLEX WITH NADPH