Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
(-)Biological Unit 9
(-)Biological Unit 10
(-)Biological Unit 11
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)
Image Biological Unit 9
Biological Unit 9  (Jmol Viewer)
Image Biological Unit 10
Biological Unit 10  (Jmol Viewer)
Image Biological Unit 11
Biological Unit 11  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE UBZ1AND2 TANDEM OF THE UBIQUITIN-BINDING ADAPTOR PROTEIN TAX1BP1
 
Authors :  M. A. Ceregido, M. Spinola-Amilibia, L. Buts, J. Rivera, J. Bravo, N. A. J. Van Nuland
Date :  09 May 13  (Deposition) - 20 Nov 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Keywords :  Apoptosis, Ubz Domains, Ubiquitin, Inflammation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Ceregido, M. Spinola-Amilibia, L. Buts, J. Rivera-Torres, A. Garcia-Pino, J. Bravo, N. A. J. Van Nuland
The Structure Of Tax1Bp1 Ubz1 + 2 Provides Insight Into Target Specificity And Adaptability
J. Mol. Biol. V. 426 674 2014
PubMed-ID: 24239949  |  Reference-DOI: 10.1016/J.JMB.2013.11.006

(-) Compounds

Molecule 1 - TAX1-BINDING PROTEIN 1
    Chains: A, B, C, D, E, F, G, H, I, J, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-6XHIS-PP/TAX1BP1_725-789
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 725-789
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRAF6-BINDING PROTEIN, TAX1BP1

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric Unit : ABCDEFGHIJK
Biological Unit 1 (1x): A          
Biological Unit 2 (1x):  B         
Biological Unit 3 (1x):   C        
Biological Unit 4 (1x):    D       
Biological Unit 5 (1x):     E      
Biological Unit 6 (1x):      F     
Biological Unit 7 (1x):       G    
Biological Unit 8 (1x):        H   
Biological Unit 9 (1x):         I  
Biological Unit 10 (1x):          J 
Biological Unit 11 (1x):           K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 34)

Asymmetric Unit (2, 34)
No.NameCountTypeFull Name
1CL12Ligand/IonCHLORIDE ION
2ZN22Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 8 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 10 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 11 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:10 , CYS A:13 , HIS A:29 , HIS A:33BINDING SITE FOR RESIDUE ZN A 101
02AC2SOFTWARECYS A:37 , CYS A:40 , HIS A:56 , HIS A:60BINDING SITE FOR RESIDUE ZN A 102
03AC3SOFTWAREARG A:55BINDING SITE FOR RESIDUE CL A 103
04AC4SOFTWARECYS B:10 , CYS B:13 , HIS B:29 , HIS B:33BINDING SITE FOR RESIDUE ZN B 101
05AC5SOFTWARECYS B:37 , CYS B:40 , HIS B:56 , HIS B:60BINDING SITE FOR RESIDUE ZN B 102
06AC6SOFTWAREARG B:55BINDING SITE FOR RESIDUE CL B 103
07AC7SOFTWAREHIS B:60BINDING SITE FOR RESIDUE CL B 104
08AC8SOFTWARECYS C:10 , CYS C:13 , HIS C:29 , HIS C:33BINDING SITE FOR RESIDUE ZN C 101
09AC9SOFTWARECYS C:37 , CYS C:40 , HIS C:56 , HIS C:60BINDING SITE FOR RESIDUE ZN C 102
10BC1SOFTWAREARG C:55BINDING SITE FOR RESIDUE CL C 103
11BC2SOFTWARECYS D:10 , CYS D:13 , HIS D:29 , HIS D:33BINDING SITE FOR RESIDUE ZN D 101
12BC3SOFTWARECYS D:37 , CYS D:40 , HIS D:56 , HIS D:60BINDING SITE FOR RESIDUE ZN D 102
13BC4SOFTWAREARG D:55BINDING SITE FOR RESIDUE CL D 103
14BC5SOFTWARECYS E:10 , CYS E:13 , HIS E:29 , HIS E:33BINDING SITE FOR RESIDUE ZN E 101
15BC6SOFTWARECYS E:37 , CYS E:40 , HIS E:56 , HIS E:60BINDING SITE FOR RESIDUE ZN E 102
16BC7SOFTWAREGLN E:51 , ARG E:55 , HOH E:2004BINDING SITE FOR RESIDUE CL E 103
17BC8SOFTWARECYS F:10 , CYS F:13 , HIS F:29 , HIS F:33BINDING SITE FOR RESIDUE ZN F 101
18BC9SOFTWARECYS F:37 , CYS F:40 , HIS F:56 , HIS F:60BINDING SITE FOR RESIDUE ZN F 102
19CC1SOFTWAREARG F:55BINDING SITE FOR RESIDUE CL F 103
20CC2SOFTWARECYS G:10 , CYS G:13 , HIS G:29 , HIS G:33BINDING SITE FOR RESIDUE ZN G 101
21CC3SOFTWARECYS G:37 , CYS G:40 , HIS G:56 , HIS G:60BINDING SITE FOR RESIDUE ZN G 102
22CC4SOFTWAREHOH F:2003 , ARG G:55BINDING SITE FOR RESIDUE CL G 103
23CC5SOFTWARECYS H:10 , CYS H:13 , HIS H:29 , HIS H:33BINDING SITE FOR RESIDUE ZN H 101
24CC6SOFTWARECYS H:37 , CYS H:40 , HIS H:56 , HIS H:60BINDING SITE FOR RESIDUE ZN H 102
25CC7SOFTWAREARG H:55BINDING SITE FOR RESIDUE CL H 103
26CC8SOFTWARECYS I:10 , CYS I:13 , HIS I:29 , HIS I:33BINDING SITE FOR RESIDUE ZN I 101
27CC9SOFTWARECYS I:37 , CYS I:40 , HIS I:56 , HIS I:60BINDING SITE FOR RESIDUE ZN I 102
28DC1SOFTWAREARG I:55BINDING SITE FOR RESIDUE CL I 103
29DC2SOFTWARECYS J:10 , CYS J:13 , HIS J:29 , HIS J:33BINDING SITE FOR RESIDUE ZN J 101
30DC3SOFTWARECYS J:37 , CYS J:40 , HIS J:56 , HIS J:60BINDING SITE FOR RESIDUE ZN J 102
31DC4SOFTWAREHOH I:2007 , GLN J:51 , HOH J:2007BINDING SITE FOR RESIDUE CL J 103
32DC5SOFTWARECYS K:10 , CYS K:13 , HIS K:29 , HIS K:33BINDING SITE FOR RESIDUE ZN K 101
33DC6SOFTWARECYS K:37 , CYS K:40 , HIS K:56 , HIS K:60BINDING SITE FOR RESIDUE ZN K 102
34DC7SOFTWAREARG K:55BINDING SITE FOR RESIDUE CL K 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BMJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BMJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BMJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BMJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4BMJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:62
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:62
                                   733       743       753       763       773       783  
          TAXB1_HUMAN   724 FDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV 785
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 4bmj A   4 MDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV  65
                                    13        23        33        43        53        63  


Chain B from PDB  Type:PROTEIN  Length:62
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:62
                                   735       745       755       765       775       785  
          TAXB1_HUMAN   726 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLN 787
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 4bmj B   6 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLN  67
                                    15        25        35        45        55        65  


Chain C from PDB  Type:PROTEIN  Length:66
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:81
                                   716       726       736       746       756       766       776       786 
          TAXB1_HUMAN   707 PSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLN 787
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .------.---------....ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 4bmj C   2 P------H---------MDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLN  67
                            |      | -       | 6        16        26        36        46        56        66 
                            2      3         4                                                               


Chain D from PDB  Type:PROTEIN  Length:58
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:58
                                   736       746       756       766       776        
          TAXB1_HUMAN   727 HKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN 784
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeeee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4bmj D   7 HKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN  64
                                    16        26        36        46        56        


Chain E from PDB  Type:PROTEIN  Length:60
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:60
                                   735       745       755       765       775       785
          TAXB1_HUMAN   726 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV 785
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4bmj E   6 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV  65
                                    15        25        35        45        55        65


Chain F from PDB  Type:PROTEIN  Length:58
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:58
                                   737       747       757       767       777        
          TAXB1_HUMAN   728 KKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV 785
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4bmj F   8 KKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV  65
                                    17        27        37        47        57        


Chain G from PDB  Type:PROTEIN  Length:59
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:59
                                   735       745       755       765       775         
          TAXB1_HUMAN   726 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN 784
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                 4bmj G   6 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN  64
                                    15        25        35        45        55         


Chain H from PDB  Type:PROTEIN  Length:64
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:82
                                   712       722       732       742       752       762       772       782  
          TAXB1_HUMAN   703 APDPPSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN 784
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---------.---------....ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 4bmj H   1 GP---------H---------MDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN  64
                             |       - |       - |      12        22        32        42        52        62  
                             2         3         4                                                            


Chain I from PDB  Type:PROTEIN  Length:63
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:78
                                   716       726       736       746       756       766       776        
          TAXB1_HUMAN   707 PSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN 784
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .------.---------....ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4bmj I   2 P------H---------MDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQN  64
                            |      | -       | 6        16        26        36        46        56        
                            2      3         4                                                            


Chain J from PDB  Type:PROTEIN  Length:64
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:79
                                   716       726       736       746       756       766       776         
          TAXB1_HUMAN   707 PSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV 785
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .------.---------....ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4bmj J   2 P------H---------MDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNV  65
                            |      | -       | 6        16        26        36        46        56         
                            2      3         4                                                             


Chain K from PDB  Type:PROTEIN  Length:61
 aligned with TAXB1_HUMAN | Q86VP1 from UniProtKB/Swiss-Prot  Length:789

    Alignment length:61
                                   735       745       755       765       775       785 
          TAXB1_HUMAN   726 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVL 786
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee....hhhhhhhhhhh..ee......ee....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 4bmj K   6 VHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVL  66
                                    15        25        35        45        55        65
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BMJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BMJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BMJ)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K   (TAXB1_HUMAN | Q86VP1)
molecular function
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0032088    negative regulation of NF-kappaB transcription factor activity    Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0032480    negative regulation of type I interferon production    Any process that stops, prevents, or reduces the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
    GO:0010803    regulation of tumor necrosis factor-mediated signaling pathway    Any process that modulates the rate or extent of the tumor necrosis factor-mediated signaling pathway. The tumor necrosis factor-mediated signaling pathway is the series of molecular signals generated as a consequence of tumor necrosis factor binding to a cell surface receptor.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4bmj)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]
    Biological Unit 9  [ Jena3D ]
    Biological Unit 10  [ Jena3D ]
    Biological Unit 11  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format | Biol. Unit 7 PNG format | Biol. Unit 8 PNG format | Biol. Unit 9 PNG format | Biol. Unit 10 PNG format | Biol. Unit 11 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4bmj
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TAXB1_HUMAN | Q86VP1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  TAXB1_HUMAN | Q86VP1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAXB1_HUMAN | Q86VP1: 2m7q 4nlh 4z4k 4z4m 5aas

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4BMJ)