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(-) Description

Title :  ZEBAVIDIN
 
Authors :  T. T. Airenne, M. Parthiban, B. Niederhauser, J. Zmurko, M. S. Kulomaa, V. P. Hytonen, M. S. Johnson
Date :  17 Apr 13  (Deposition) - 20 Nov 13  (Release) - 20 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  E,F,G,H  (1x)
Biol. Unit 2:  A,B,C,D  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Biotin-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Niederhauser, J. Zmurko, M. Parthiban, M. Ojanen, S. Kukkurainen, J. A. E. Maatta, J. Leppiniemi, J. Janis, M. Parikka, H. Turpeinen, M. Pesu, M. S. Johnson, T. T. Airenne, M. S. Kulomaa, V. P. Hytonen
Zebavidin
Plos One V. 8E77207 2013
PubMed-ID: 24204770  |  Reference-DOI: 10.1371/JOURNAL.PONE.0077207

(-) Compounds

Molecule 1 - ZEBAVIDIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-A1
    Expression System Taxid: 511693
    Organism Common: ZEBRAFISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x):     EFGH        
Biological Unit 2 (1x): ABCD            
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric Unit (2, 17)
No.NameCountTypeFull Name
1BTN16Ligand/IonBIOTIN
2GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1BTN4Ligand/IonBIOTIN
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1BTN4Ligand/IonBIOTIN
2GOL-1Ligand/IonGLYCEROL
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1BTN4Ligand/IonBIOTIN
2GOL1Ligand/IonGLYCEROL
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1BTN4Ligand/IonBIOTIN
2GOL-1Ligand/IonGLYCEROL

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:14 , SER A:18 , TYR A:33 , THR A:35 , SER A:39 , TRP A:70 , SER A:74 , SER A:76 , TRP A:78 , TRP A:96 , LEU A:98 , ASP A:117 , HOH A:2019BINDING SITE FOR RESIDUE BTN A1123
02AC2SOFTWAREASN B:14 , SER B:18 , TYR B:33 , THR B:35 , VAL B:37 , SER B:39 , ALA B:43 , TRP B:70 , SER B:74 , SER B:76 , TRP B:96 , LEU B:98 , ASP B:117BINDING SITE FOR RESIDUE BTN B1123
03AC3SOFTWAREASN C:14 , SER C:18 , TYR C:33 , THR C:35 , SER C:39 , ALA C:43 , SER C:74 , SER C:76 , TRP C:78 , TRP C:96 , ASP C:117 , HOH C:2012 , TRP D:109BINDING SITE FOR RESIDUE BTN C1123
04AC4SOFTWAREASN D:14 , LEU D:16 , SER D:18 , TYR D:33 , THR D:35 , SER D:39 , SER D:74 , SER D:76 , TRP D:78 , TRP D:96 , ASP D:117BINDING SITE FOR RESIDUE BTN D1123
05AC5SOFTWAREASN E:14 , LEU E:16 , SER E:18 , TYR E:33 , THR E:35 , SER E:39 , ALA E:43 , TRP E:70 , SER E:74 , SER E:76 , TRP E:78 , TRP E:96 , LEU E:98 , ASP E:117 , HOH E:2008BINDING SITE FOR RESIDUE BTN E1123
06AC6SOFTWAREASN F:14 , SER F:18 , TYR F:33 , THR F:35 , VAL F:37 , SER F:39 , ALA F:43 , TRP F:70 , SER F:74 , SER F:76 , TRP F:78 , TRP F:96 , ASP F:117BINDING SITE FOR RESIDUE BTN F1123
07AC7SOFTWAREASN G:14 , LEU G:16 , SER G:18 , TYR G:33 , THR G:35 , VAL G:37 , SER G:39 , ALA G:43 , TRP G:70 , SER G:74 , SER G:76 , TRP G:96 , ASP G:117BINDING SITE FOR RESIDUE BTN G1123
08AC8SOFTWAREASN H:14 , SER H:18 , TYR H:33 , THR H:35 , VAL H:37 , SER H:39 , TRP H:70 , SER H:74 , SER H:76 , TRP H:78 , TRP H:96 , LEU H:98 , ASP H:117 , HOH H:2004BINDING SITE FOR RESIDUE BTN H1123
09AC9SOFTWAREASN I:14 , LEU I:16 , SER I:18 , TYR I:33 , THR I:35 , VAL I:37 , SER I:39 , TRP I:70 , SER I:74 , SER I:76 , TRP I:78 , TRP I:96 , LEU I:98 , ASP I:117 , HOH I:2014 , TRP J:109BINDING SITE FOR RESIDUE BTN I1123
10BC1SOFTWARETRP I:109 , ASN J:14 , LEU J:16 , SER J:18 , TYR J:33 , THR J:35 , VAL J:37 , SER J:39 , ALA J:43 , SER J:74 , SER J:76 , TRP J:96 , ASP J:117 , HOH J:2012BINDING SITE FOR RESIDUE BTN J1123
11BC2SOFTWAREASN K:14 , SER K:18 , TYR K:33 , THR K:35 , SER K:39 , SER K:74 , SER K:76 , TRP K:78 , TRP K:96 , LEU K:98 , ASP K:117BINDING SITE FOR RESIDUE BTN K1123
12BC3SOFTWAREASN L:14 , LEU L:16 , SER L:18 , TYR L:33 , THR L:35 , VAL L:37 , SER L:39 , ALA L:43 , TRP L:70 , SER L:74 , SER L:76 , TRP L:78 , TRP L:96 , ASP L:117BINDING SITE FOR RESIDUE BTN L1125
13BC4SOFTWAREASN M:14 , SER M:18 , TYR M:33 , THR M:35 , SER M:39 , ALA M:43 , SER M:74 , SER M:76 , TRP M:78 , TRP M:96 , ASP M:117 , HOH M:2026 , TRP N:109BINDING SITE FOR RESIDUE BTN M1124
14BC5SOFTWARETRP M:109 , ASN N:14 , LEU N:16 , SER N:18 , TYR N:33 , THR N:35 , VAL N:37 , SER N:39 , ALA N:43 , TRP N:70 , SER N:74 , SER N:76 , TRP N:78 , TRP N:96 , ASP N:117BINDING SITE FOR RESIDUE BTN N1123
15BC6SOFTWAREASN O:14 , SER O:18 , TYR O:33 , THR O:35 , SER O:39 , SER O:74 , SER O:76 , TRP O:78 , TRP O:96 , LEU O:98 , ASP O:117BINDING SITE FOR RESIDUE BTN O1123
16BC7SOFTWARETRP O:109 , ASN P:14 , LEU P:16 , SER P:18 , TYR P:33 , THR P:35 , VAL P:37 , SER P:39 , ALA P:43 , TRP P:70 , SER P:74 , SER P:76 , TRP P:78 , TRP P:96 , LEU P:98 , ASP P:117 , HOH P:2008BINDING SITE FOR RESIDUE BTN P1124
17BC8SOFTWAREGLU J:116 , HOH K:2024 , HOH K:2031 , GLU L:15 , TRP L:96 , GLU L:116BINDING SITE FOR RESIDUE GOL L1126

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:6 -A:82
2B:6 -B:82
3C:6 -C:82
4D:6 -D:82
5E:6 -E:82
6F:6 -F:82
7G:6 -G:82
8H:6 -H:82
9I:6 -I:82
10J:6 -J:82
11K:6 -K:82
12L:6 -L:82
13M:6 -M:82
14N:6 -N:82
15O:6 -O:82
16P:6 -P:82

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BJ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BJ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BJ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4BJ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8a_ A: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 A   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain B from PDB  Type:PROTEIN  Length:118
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:118
                                    56        66        76        86        96       106       116       126       136       146       156        
         E7F650_DANRE    47 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8b_ B: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeeeee...eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee............eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 B   5 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    14        24        34        44        54        64        74        84        94       104       114        


Chain C from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8c_ C: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 C   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain D from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8d_ D: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..........hhh.eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee....hhhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 D   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain E from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8e_ E: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 E   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain F from PDB  Type:PROTEIN  Length:118
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:118
                                    56        66        76        86        96       106       116       126       136       146       156        
         E7F650_DANRE    47 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8f_ F: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 F   5 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    14        24        34        44        54        64        74        84        94       104       114        


Chain G from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8g_ G: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 G   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain H from PDB  Type:PROTEIN  Length:118
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:118
                                    56        66        76        86        96       106       116       126       136       146       156        
         E7F650_DANRE    47 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8h_ H: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee....hhhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 H   5 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    14        24        34        44        54        64        74        84        94       104       114        


Chain I from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8i_ I: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee............eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 I   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain J from PDB  Type:PROTEIN  Length:119
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:119
                                    55        65        75        85        95       105       115       125       135       145       155         
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8j_ J: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.......hhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 J   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    13        23        33        43        53        63        73        83        93       103       113         


Chain K from PDB  Type:PROTEIN  Length:120
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:120
                                    54        64        74        84        94       104       114       124       134       144       154       164
         E7F650_DANRE    45 VSSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8k_ K: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bj8 K   3 VSSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    12        22        32        42        52        62        72        82        92       102       112       122


Chain L from PDB  Type:PROTEIN  Length:121
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:121
                                    55        65        75        85        95       105       115       125       135       145       155       165 
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTGV 166
               SCOP domains d4bj8l_ L: automated matches                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..........hhh.eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee....hhhhhhh.eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 L   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTGV 124
                                    13        23        33        43        53        63        73        83        93       103       113       123 


Chain M from PDB  Type:PROTEIN  Length:120
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:120
                                    55        65        75        85        95       105       115       125       135       145       155       165
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTG 165
               SCOP domains d4bj8m_ M: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee....eeeeee...eeeeeee..........hhh.eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee....hhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bj8 M   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTG 123
                                    13        23        33        43        53        63        73        83        93       103       113       123


Chain N from PDB  Type:PROTEIN  Length:118
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:118
                                    56        66        76        86        96       106       116       126       136       146       156        
         E7F650_DANRE    47 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8n_ N: automated matches                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeeeee...eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 N   5 SCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    14        24        34        44        54        64        74        84        94       104       114        


Chain O from PDB  Type:PROTEIN  Length:122
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:122
                                    52        62        72        82        92       102       112       122       132       142       152       162  
         E7F650_DANRE    43 AKVSSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 164
               SCOP domains d4bj8o_ O: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee.....hhhhhh.eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bj8 O   1 QTVSSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKT 122
                                    10        20        30        40        50        60        70        80        90       100       110       120  


Chain P from PDB  Type:PROTEIN  Length:120
 aligned with E7F650_DANRE | E7F650 from UniProtKB/TrEMBL  Length:168

    Alignment length:120
                                    55        65        75        85        95       105       115       125       135       145       155       165
         E7F650_DANRE    46 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTHGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTG 165
               SCOP domains d4bj8p_ P: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee....eeeeeee..eeeeeee..............eeeeeeee......eeeeeee.....eeeeeeeeee.....eeeeeeeeee....hhhhhh..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bj8 P   4 SSCNVTGVWRNELGSTLRVKAEGSEVRGVYQTAVESTRGAAGHHRSARIIGMVSDGTQPTVSFSVLWEKGSCSAWVGQCFILDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFFKTG 123
                                    13        23        33        43        53        63        73        83        93       103       113       123
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BJ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BJ8)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (E7F650_DANRE | E7F650)
molecular function
    GO:0009374    biotin binding    Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.

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 Related Entries

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