Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF ALANINE RACEMASE FROM AEROMONAS HYDROPHILA
 
Authors :  L. H. Otero, C. Carrasco-Lopez, N. Bernardo-Garcia, J. A. Hermoso
Date :  09 Apr 13  (Deposition) - 15 Jan 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Isomerase, D-Amino Acids (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Espaillat, C. Carrasco-Lopez, N. Bernardo-Garcia, N. Pietrosemoli, L. H. Otero, L. Alvarez, M. A. De Pedro, F. Pazos, B. M. Davis, M. K. Waldor, J. A. Hermoso, F. Cava
Structural Basis For The Broad Specificity Of A New Family Of Amino-Acid Racemases.
Acta Crystallogr. , Sect. D V. 70 79 2014
PubMed-ID: 24419381  |  Reference-DOI: 10.1107/S1399004713024838

(-) Compounds

Molecule 1 - ALANINE RACEMASE
    Atcc7966
    ChainsA, B, C, D
    EC Number5.1.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET
    Expression System Vector TypePLASMID
    Organism ScientificAEROMONAS HYDROPHILA SUBSP. HYDROPHILA
    Organism Taxid196023

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1KCX4Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 4BHY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BHY)

(-) Cis Peptide Bonds  (44, 44)

Asymmetric Unit
No.Residues
1Ala A:31 -Val A:32
2Gln A:152 -Pro A:153
3Leu A:186 -Gly A:187
4Cys A:205 -Asp A:206
5Ser A:218 -Pro A:219
6Ile B:8 -Asn B:9
7Ala B:31 -Val B:32
8Gln B:152 -Pro B:153
9Ile B:156 -Met B:157
10His B:159 -Phe B:160
11Gln B:174 -Ile B:175
12Ile B:175 -Asp B:176
13Leu B:186 -Gly B:187
14His B:204 -Cys B:205
15Tyr B:228 -Asp B:229
16Pro B:282 -Asn B:283
17Gly B:284 -Thr B:285
18Phe C:-2 -Gln C:-1
19Met C:1 -Lys C:2
20Ile C:8 -Asn C:9
21Ala C:31 -Val C:32
22Gly C:126 -Met C:127
23Gln C:152 -Pro C:153
24Asn C:155 -Ile C:156
25Ile C:156 -Met C:157
26Ile C:175 -Asp C:176
27Leu C:186 -Gly C:187
28Met C:191 -Ala C:192
29Asn C:193 -Ser C:194
30Phe C:220 -Pro C:221
31Arg C:244 -Asp C:245
32Asp C:263 -Thr C:264
33Tyr C:356 -Val C:357
34Thr D:-7 -Glu D:-6
35Ala D:31 -Val D:32
36Gln D:152 -Pro D:153
37Phe D:154 -Asn D:155
38Ile D:175 -Asp D:176
39Leu D:186 -Gly D:187
40Met D:191 -Ala D:192
41Asp D:229 -Leu D:230
42Arg D:244 -Asp D:245
43Asp D:245 -His D:246
44Tyr D:356 -Val D:357

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BHY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BHY)

(-) Exons   (0, 0)

(no "Exon" information available for 4BHY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:325
 aligned with A0KH11_AERHH | A0KH11 from UniProtKB/TrEMBL  Length:357

    Alignment length:364
                                   1                                                                                                                                                                                                                                                                                                                                                                    
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353    
         A0KH11_AERHH     - -------MKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTAPLLGERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeehhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhh....eeee.hhhhhhhhhh......eee.....hhhhhhhhhhhheeee..hhhhhhhhhhh.......ee....-----------....hhhhhhh..............------------...hhhhhhh......----------------.............................eeee..eeeeee...................eeeee...............eeeee..eeeeeeeee....eeee....................hhhhhhhhhh.hhhhhh.......eeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bhy A  -6 ENLYFQSMKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLkLD-----------EMPAFIERLAKCKNVVQPFNIMTHF------------EQIDLFSQLTAPLLGE----------------CDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
                                     3        13        23        33        43        53        63        73        83        93       103       113       123|        -  |    143       153      |  -       173       183    |    -         - |     213       223       233       243       253       263       273       283       293       303       313       323       333       343       353    
                                                                                                                                                          122-KCX       136                     160          173            188              205                                                                                                                                                        
                                                                                                                                                            124                                                                                                                                                                                                                                         

Chain B from PDB  Type:PROTEIN  Length:320
 aligned with A0KH11_AERHH | A0KH11 from UniProtKB/TrEMBL  Length:357

    Alignment length:365
                                    1                                                                                                                                                                                                                                                                                                                                                                    
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352     
         A0KH11_AERHH     - --------MKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTAPLLGERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee.hhhhhhhhhhhhhhhh...eeeee........hhhhhhhhh....eeee.hhhhhhhhhhh.....eee.....hhhhhhhhhhh.ee.ee.hhhhhhhhhhh........ee...--------.......hhhhhhh...............-----------..................-----------.....ee..........................eee..eeeee..-----------........eeee..................ee..ee...........eeee..----..............hhhhhhhhhh.hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bhy B  -7 TENLYFQSMKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLkLD--------RADEMPAFIERLAKCKNVVQPFNIMTHFS-----------EQIDLFSQLTAPLLGERA-----------DSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDH-----------WVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLG----DKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
                                     2        12        22        32        42        52        62        72        82        92       102       112       122 |       -|      142       152        |-         -|      182       | -       202       212       222       232       242   |     -     | 262       272       282       292       302       | -  |    322       332       342       352     
                                                                                                                                                           122-KCX    133                         161         173              190         202                                         246         258                                                 310  315                                          
                                                                                                                                                             124                                                                                                                                                                                                                                         

Chain C from PDB  Type:PROTEIN  Length:317
 aligned with A0KH11_AERHH | A0KH11 from UniProtKB/TrEMBL  Length:357

    Alignment length:360
                               1                                                                                                                                                                                                                                                                                                                                                                    
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357
         A0KH11_AERHH     - ---MKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTAPLLGERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee.hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhh.....eee.....hhhhhhhhhhh.eeeee.hhhhhhhhhhh......eeee......-------.....hhhhhhh...........---------------....hhhhhh................------..ee..........................eee........---------------......eee................eeee..eeee.........eee.....................hhhhhhhhhh.hhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bhy C  -2 FQSMKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLkLDTGM-------DEMPAFIERLAKCKNVVQPFNIM---------------EQIDLFSQLTAPLLGERAMANSAGIL------CDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRD---------------DRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
                                     7        17        27        37        47        57        67        77        87        97       107       117    |  127       137       147       157         -     | 177       187       197|      207       217       227       237       | -         -   |   267       277       287       297       307       317       327       337       347       357
                                                                                                                                                      122-KCX7     135                   157             173                      198    205                                     245             261                                                                                                

Chain D from PDB  Type:PROTEIN  Length:336
 aligned with A0KH11_AERHH | A0KH11 from UniProtKB/TrEMBL  Length:357

    Alignment length:371
                                          1                                                                                                                                                                                                                                                                                                                                                                    
                                     -    |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356 
         A0KH11_AERHH     - --------------MKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLKLDTGMHRLGVRADEMPAFIERLAKCKNVVQPFNIMTHFSRSDELEQPTTREQIDLFSQLTAPLLGERAMANSAGILAWPDSHCDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLIAVRDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeehhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh....eeee.hhhhhhhhhh......eee.....hhhhhhhhhhh.eeeee.hhhhhhhhhhh......eeee..-----------.....hhhhhhhh..........---------------....hhhhhh...............-------..ee.........................eeee....--......................eeee................eeee..eeeeeeeee....eeee....................hhhhhhhhhh.hhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bhy D -13 DYDIPTTENLYFQSMKAAIAQINTAALRHNLAVVKRHAPQCKIIAVVKANAYGHGLLPVARTLVDADAYAVARIEEALMLRSCAVVKPIVLLEGFFSAADLPVLAANNLQTAVHTWEQLEALEQADLPAPVVAWLkL-----------DEMPAFIERLAKCKNVVQPFNIM---------------EQIDLFSQLTAPLLGERAMANSAGI-------CDWVRPGVILYGVSPFPNTVAADYDLQPVMTLKTQLI--RDHKAGEPVGYGANWVSDRDTRLGVIAIGYGDGYPRMAPNGTPVLVNGRIVPLVGRVSMDMTTVDLGPGATDKAGDEAVLWGEGLPVERVADQIGTIPYELITKLTSRVFMEYV 357
                                    -4         6        16        26        36        46        56        66        76        86        96       106       116     ||  -       136       146       156|        -      |176       186       196|      206       216       226       236    |  246       256       266       276       286       296       306       316       326       336       346       356 
                                                                                                                                                                 122-KCX      135                   157             173                     197     205                                 241  |                                                                                                                 
                                                                                                                                                                  123                                                                                                                      244                                                                                                                 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BHY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BHY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BHY)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (A0KH11_AERHH | A0KH11)
molecular function
    GO:0008784    alanine racemase activity    Catalysis of the reaction: L-alanine = D-alanine.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
biological process
    GO:0030632    D-alanine biosynthetic process    The chemical reactions and pathways resulting in the formation of D-alanine, the D-enantiomer of the amino acid alanine, i.e (2R)-2-aminopropanoic acid.
    GO:0006522    alanine metabolic process    The chemical reactions and pathways involving alanine, 2-aminopropanoic acid.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 4bhy)
 
  Cis Peptide Bonds
    Ala A:31 - Val A:32   [ RasMol ]  
    Ala B:31 - Val B:32   [ RasMol ]  
    Ala C:31 - Val C:32   [ RasMol ]  
    Ala D:31 - Val D:32   [ RasMol ]  
    Arg C:244 - Asp C:245   [ RasMol ]  
    Arg D:244 - Asp D:245   [ RasMol ]  
    Asn C:155 - Ile C:156   [ RasMol ]  
    Asn C:193 - Ser C:194   [ RasMol ]  
    Asp C:263 - Thr C:264   [ RasMol ]  
    Asp D:229 - Leu D:230   [ RasMol ]  
    Asp D:245 - His D:246   [ RasMol ]  
    Cys A:205 - Asp A:206   [ RasMol ]  
    Gln A:152 - Pro A:153   [ RasMol ]  
    Gln B:152 - Pro B:153   [ RasMol ]  
    Gln B:174 - Ile B:175   [ RasMol ]  
    Gln C:152 - Pro C:153   [ RasMol ]  
    Gln D:152 - Pro D:153   [ RasMol ]  
    Gly B:284 - Thr B:285   [ RasMol ]  
    Gly C:126 - Met C:127   [ RasMol ]  
    His B:159 - Phe B:160   [ RasMol ]  
    His B:204 - Cys B:205   [ RasMol ]  
    Ile B:156 - Met B:157   [ RasMol ]  
    Ile B:175 - Asp B:176   [ RasMol ]  
    Ile B:8 - Asn B:9   [ RasMol ]  
    Ile C:156 - Met C:157   [ RasMol ]  
    Ile C:175 - Asp C:176   [ RasMol ]  
    Ile C:8 - Asn C:9   [ RasMol ]  
    Ile D:175 - Asp D:176   [ RasMol ]  
    Leu A:186 - Gly A:187   [ RasMol ]  
    Leu B:186 - Gly B:187   [ RasMol ]  
    Leu C:186 - Gly C:187   [ RasMol ]  
    Leu D:186 - Gly D:187   [ RasMol ]  
    Met C:1 - Lys C:2   [ RasMol ]  
    Met C:191 - Ala C:192   [ RasMol ]  
    Met D:191 - Ala D:192   [ RasMol ]  
    Phe C:-2 - Gln C:-1   [ RasMol ]  
    Phe C:220 - Pro C:221   [ RasMol ]  
    Phe D:154 - Asn D:155   [ RasMol ]  
    Pro B:282 - Asn B:283   [ RasMol ]  
    Ser A:218 - Pro A:219   [ RasMol ]  
    Thr D:-7 - Glu D:-6   [ RasMol ]  
    Tyr B:228 - Asp B:229   [ RasMol ]  
    Tyr C:356 - Val C:357   [ RasMol ]  
    Tyr D:356 - Val D:357   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4bhy
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A0KH11_AERHH | A0KH11
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  5.1.1.1
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  A0KH11_AERHH | A0KH11
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4BHY)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4BHY)