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(-) Description

Title :  MEASLES VIRUS PHOSPHOPROTEIN TETRAMERIZATION DOMAIN
 
Authors :  D. Blocquel, J. Habchi, E. Durand, M. Sevajol, F. Ferron, N. Papageorgi S. Longhi
Date :  08 Apr 13  (Deposition) - 09 Apr 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oligomerization Domain, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Blocquel, J. Habchi, E. Durand, M. Sevajol, F. Ferron, J. Erales, N. Papageorgiou, S. Longhi
Coiled-Coil Deformations In Crystal Structures: The Measles Virus Phosphoprotein Multimerization Domain As An Illustrative Example.
Acta Crystallogr. , Sect. D V. 70 1589 2014
PubMed-ID: 24914970  |  Reference-DOI: 10.1107/S139900471400234X

(-) Compounds

Molecule 1 - PHOSPHOPROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Fragment: TETRAMERIZATION DOMAIN, RESIDUES 304-360
    Mutation: YES
    Organism Scientific: MEASLES VIRUS
    Organism Taxid: 11234
    Other Details: TITLE IS-MEASLES VIRUS PHOSPHOPROTEIN TETRAMERIZATION DOMAIN
    Strain: EDMONSTON B
    Synonym: PROTEIN P

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:313 , HOH A:2004 , HOH A:2042BINDING SITE FOR RESIDUE ACT A1062
2AC2SOFTWARELEU A:341BINDING SITE FOR RESIDUE ACT A1063
3AC3SOFTWAREHIS A:361BINDING SITE FOR RESIDUE ACT A1064
4AC4SOFTWAREASN B:329 , ILE B:332 , ASN C:329 , ASN D:329BINDING SITE FOR RESIDUE CA B1061
5AC5SOFTWARELYS B:335 , HOH B:2025 , GLU D:337 , LEU D:340BINDING SITE FOR RESIDUE ACT D1063

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BHV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp B:309 -Glu B:310

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BHV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BHV)

(-) Exons   (0, 0)

(no "Exon" information available for 4BHV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:57
 aligned with PHOSP_MEASA | P35974 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:60
                                   316       326       336       346       356       366
          PHOSP_MEASA   307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISISTLEGH 366
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4bhv A 307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISIH---HH 363
                                   316       326       336       346       356    |  363
                                                                                361 362 


Chain B from PDB  Type:PROTEIN  Length:56
 aligned with PHOSP_MEASA | P35974 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:56
                                   316       326       336       346       356      
          PHOSP_MEASA   307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISIST 362
               SCOP domains -------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------- Transcript
                 4bhv B 307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISIHH 362
                                   316       326       336       346       356      


Chain C from PDB  Type:PROTEIN  Length:57
 aligned with PHOSP_MEASA | P35974 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:60
                                   316       326       336       346       356       366
          PHOSP_MEASA   307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISISTLEGH 366
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4bhv C 307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISIH---HH 363
                                   316       326       336       346       356    |  363
                                                                                361 362 


Chain D from PDB  Type:PROTEIN  Length:58
 aligned with PHOSP_MEASA | P35974 from UniProtKB/Swiss-Prot  Length:507

    Alignment length:60
                                   316       326       336       346       356       366
          PHOSP_MEASA   307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISISTLEGH 366
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4bhv D 307 YDDELFSDVQDIKTALAKIHEDNQKIISKLESLLLLKGEVESIKKQINRQNISIH--HHH 364
                                   316       326       336       346       356    |  364
                                                                                361  |  
                                                                                   362
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BHV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BHV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BHV)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (PHOSP_MEASA | P35974)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.

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  4bhv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHOSP_MEASA | P35974: 4c5q

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