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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL CMP-KDO BINDING DOMAIN OF WAAA FROM ACINETOBACTER BAUMANNII
 
Authors :  Y. R. Kimbung, M. Hakansson, D. Logan, P. F. Wang, M. Schulz, U. Mamat, R. W. Woodard
Date :  18 Mar 13  (Deposition) - 02 Apr 14  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. R. Kimbung, M. Hakansson, D. Logan, P. F. Wang, M. Schulz, U. Mamat, R. W. Woodard
Crystal Structure Of The C-Terminal Cmp-Kdo Binding Domain Of Waaa From Acinetobacter Baumannii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSSETTA2 PLYSS
    Expression System Vector: PET19B
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL CMP-KDO BINDING DOMAIN, RESIDUES 220-430
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 470

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1BME2Ligand/IonBETA-MERCAPTOETHANOL
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1BME6Ligand/IonBETA-MERCAPTOETHANOL
2SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:246 , ARG A:274 , HIS A:275 , HIS A:340 , HOH A:2054 , HOH A:2055 , HOH A:2187 , HOH A:2188BINDING SITE FOR RESIDUE SO4 A 500
2AC2SOFTWARECYS A:390 , GLU A:393BINDING SITE FOR RESIDUE BME A 601
3AC3SOFTWAREARG A:274 , PRO A:276 , GLU A:277BINDING SITE FOR RESIDUE BME A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BFC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:247 -Pro A:248
2Glu A:335 -Pro A:336

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhheeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh...eee.hhh........eee.....hhhhhhhhh.eeee............hhhhhhh...eee...hhhhhhhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bfc A 218 HMAFIKQAAQLHQQWYLENRQVVTIASTHAPEEQQILEALAPYLNSDRKLVCIVVPRHPERFDEVFEICQNLNLITHRRSMGQSIHASTQVYLADSMGELWLWYALSQVCFVGGSLNEPGGGHNILEPMVLNVPTVVGPRYFNFQTIVDEFIDENAVLIAQDAQQVVDIWLACLAEPEATEQLVAQAHKVLQR 410
                                   227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407
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 Classification and Annotation

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