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(-) Description

Title :  OPEN CONFORMATION OF O. PICEAE STEROL ESTERASE
 
Authors :  J. Gutierrez-Fernandez, M. E. Vaquero, A. Prieto, J. Barriuso, M. J. Go J. A. Hermoso
Date :  06 Mar 13  (Deposition) - 26 Mar 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Ophiostoma (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Gutierrez-Fernandez, M. E. Vaquero, A. Prieto, J. Barriuso, M. J. Martinez, J. A. Hermoso
Crystal Structures Of Ophiostoma Piceae Sterol Esterase: Structural Insights Into Activation Mechanism And Product Release.
J. Struct. Biol. V. 187 215 2014
PubMed-ID: 25108239  |  Reference-DOI: 10.1016/J.JSB.2014.07.007

(-) Compounds

Molecule 1 - STEROL ESTERASE
    Chains: A, B
    EC Number: 3.1.1.13
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Strain: KM71
    Expression System Taxid: 4922
    Expression System Vector: PPIC9
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 13-549
    Organism Scientific: OPHIOSTOMA PICEAE
    Organism Taxid: 61273
    Other Details: N-ACETYLGLUCOSAMINE GLYCOSYLATIONS IN POSITIONS 362 AND 380

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 20)

Asymmetric/Biological Unit (7, 20)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
27P92Ligand/Ion[(2R)-2-HEPTANOYLOXY-3-PHOSPHONOOXY-PROPYL]NONANOATE
3GOL3Ligand/IonGLYCEROL
4NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NO32Ligand/IonNITRATE ION
6PEG6Ligand/IonDI(HYDROXYETHYL)ETHER
7PGE3Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:455 , PHE A:458 , LEU A:470 , GLN A:471 , VAL A:476 , LEU A:477 , ASN A:479 , ALA A:522 , HOH A:2462 , HOH A:2463 , HOH A:2464 , HOH A:2472 , HOH A:2528 , HOH A:2529BINDING SITE FOR RESIDUE 7P9 A1552
02AC2SOFTWAREPHE A:98 , ASP B:455 , PHE B:458 , LEU B:470 , GLN B:471 , VAL B:476 , LEU B:477BINDING SITE FOR RESIDUE 7P9 B1551
03AC3SOFTWAREGLY A:135 , SER A:220 , ALA A:221 , ILE A:224 , PRO A:257 , ILE A:313 , LEU A:315 , MET A:425 , THR A:426 , PHE A:427 , ILE A:544 , PHE A:547 , HOH A:2184BINDING SITE FOR RESIDUE 1PE A1553
04AC4SOFTWARETYR A:144BINDING SITE FOR RESIDUE PGE A1554
05AC5SOFTWARELEU A:355 , HOH A:2530BINDING SITE FOR RESIDUE PEG A1555
06AC6SOFTWAREGLY B:135 , SER B:220 , ALA B:221 , ILE B:224 , THR B:426 , HOH B:2065BINDING SITE FOR RESIDUE PEG B1552
07AC7SOFTWAREPEG B:1554 , PEG B:1555BINDING SITE FOR RESIDUE PEG B1553
08AC8SOFTWAREPEG B:1553BINDING SITE FOR RESIDUE PEG B1554
09AC9SOFTWAREPHE B:464 , PEG B:1553BINDING SITE FOR RESIDUE PEG B1555
10BC1SOFTWARELEU B:355BINDING SITE FOR RESIDUE PGE B1556
11BC2SOFTWAREGLU A:350 , PHE A:403 , ASN A:404 , LEU A:451 , ARG A:533 , HOH A:2373 , HOH A:2374BINDING SITE FOR RESIDUE GOL A1556
12BC3SOFTWAREGLU B:350 , ASN B:404 , LEU B:451 , GLN B:519 , ARG B:533BINDING SITE FOR RESIDUE GOL B1557
13BC4SOFTWAREPHE B:408 , ASN B:409BINDING SITE FOR RESIDUE GOL B1558
14BC5SOFTWAREARG A:36 , ASP A:64 , THR A:65 , THR A:66 , GLY A:67 , ILE A:68 , HOH A:2531BINDING SITE FOR RESIDUE NO3 A1557
15BC6SOFTWAREASN B:81 , HIS B:272 , SER B:303BINDING SITE FOR RESIDUE NO3 B1559
16BC7SOFTWARETYR A:310 , ASN A:362 , HOH A:2395 , HOH A:2525BINDING SITE FOR MONO-SACCHARIDE NAG A1550 BOUND TO ASN A 362
17BC8SOFTWAREALA A:259 , ASN A:380 , GLU A:384 , ARG A:548 , HOH A:2523 , HOH A:2527BINDING SITE FOR MONO-SACCHARIDE NAG A1551 BOUND TO ASN A 380
18BC9SOFTWARETYR B:310 , ASN B:362 , HOH B:2139BINDING SITE FOR MONO-SACCHARIDE NAG B1550 BOUND TO ASN B 362

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:72 -A:108
2A:279 -A:288
3B:72 -B:108
4B:279 -B:288

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:401 -Pro A:402
2Val A:476 -Leu A:477
3Ser B:401 -Pro B:402
4Val B:476 -Leu B:477

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BE9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BE9)

(-) Exons   (0, 0)

(no "Exon" information available for 4BE9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:538
 aligned with Q2TFW1_9PEZI | Q2TFW1 from UniProtKB/TrEMBL  Length:549

    Alignment length:538
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        
         Q2TFW1_9PEZI    12 RTTVNVNYPEGEVVGVSVLGIESFRGVPFAQPPVGNLRLKPPVRYTENIGTKDTTGIGPSCPQMYLSTGNGELLFQLVGNLINIPLFQTATLSSEDCLTLNIQRPAGTTSNSSLPVLFWIFGGGFELGTNQYYDGIDLLTEGISLGEPFIFVAINYRVGGFGFLGGKEIKADGSSNLGLLDQRIALEWVADNIASFGGDPSKVTIWGESAGSISVFDQMALYGGNNKYKGKALFRGGIMNSGSVVPAAPVDGVKAQAIYDHVVSEAGCAGTSDTLACLRTVDYTKFLTAVNSVPGIVSYSSIALSYLPRPDGVVLIDSPEEIVKNKQYAAVPMIIGDQEDEGTLFAVLPNNITSTAKIVQYFQDLYFYNATKEQLTAFVNTYPTDITAGSPFNTGIFNELYPGFKRLAAILGDMTFTLARRAFLQLCSEVNPDVPSWSYLASYDYGFPFLGTFHATDILQVFYGVLPNYASGSIQKYYINFVTTGDPNKGAAVDIQWPQWSAKKNILQIYATKAVIVADNFRAKSYEYLYNNIGIFRI 549
               SCOP domains d4be9a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee..eeeeeeee.....hhhhh............eee..................hhhhhhhhhhh.hhhhhhhh.......eeeeeee........eeeeeee........hhhhh.hhhhhhhhhhh....eeeee...hhhhhh..hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhh.ee..ee...eeeee...........hhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhh..........................hhhhhhhh.......eeeeee....hhhhh......hhhhhhhhhhhhh....hhhhhhhhhhh...hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.............hhhhhhh......hhhhhhhhhhhhhhhhhh.............hhhhhheeeee....eeeee...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4be9 A  12 FTTVNVNYPEGEVVGVSVLGIESFRGVPFAQPPVGNLRLKPPVRYTENIGTKDTTGIGPSCPQMYLSTGNGELLFQLVGNLINIPLFQTATLSSEDCLTLNIQRPAGTTSNSSLPVLFWIFGGGFELGTNQYYDGIDLLTEGISLGEPFIFVAINYRVGGFGFLGGKEIKADGSSNLGLLDQRIALEWVADNIASFGGDPSKVTIWGESAGSISVFDQMALYGGNNKYKGKALFRGGIMNSGSVVPAAPVDGVKAQAIYDHVVSEAGCAGTSDTLACLRTVDYTKFLTAVNSVPGIVSYSSIALSYLPRPDGVVLIDSPEEIVKNKQYAAVPMIIGDQEDEGTLFAVLPNNITSTAKIVQYFQDLYFYNATKEQLTAFVNTYPTDITAGSPFNTGIFNELYPGFKRLAAILGDMTFTLARRAFLQLCSEVNPDVPSWSYLASYDYGFPFLGTFHATDILQVFYGVLPNYASGSIQKYYINFVTTGDPNKGAAVDIQWPQWSAKKNILQIYATKAVIVADNFRAKSYEYLYNNIGIFRI 549
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541        


Chain B from PDB  Type:PROTEIN  Length:537
 aligned with Q2TFW1_9PEZI | Q2TFW1 from UniProtKB/TrEMBL  Length:549

    Alignment length:537
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       
         Q2TFW1_9PEZI    13 TTVNVNYPEGEVVGVSVLGIESFRGVPFAQPPVGNLRLKPPVRYTENIGTKDTTGIGPSCPQMYLSTGNGELLFQLVGNLINIPLFQTATLSSEDCLTLNIQRPAGTTSNSSLPVLFWIFGGGFELGTNQYYDGIDLLTEGISLGEPFIFVAINYRVGGFGFLGGKEIKADGSSNLGLLDQRIALEWVADNIASFGGDPSKVTIWGESAGSISVFDQMALYGGNNKYKGKALFRGGIMNSGSVVPAAPVDGVKAQAIYDHVVSEAGCAGTSDTLACLRTVDYTKFLTAVNSVPGIVSYSSIALSYLPRPDGVVLIDSPEEIVKNKQYAAVPMIIGDQEDEGTLFAVLPNNITSTAKIVQYFQDLYFYNATKEQLTAFVNTYPTDITAGSPFNTGIFNELYPGFKRLAAILGDMTFTLARRAFLQLCSEVNPDVPSWSYLASYDYGFPFLGTFHATDILQVFYGVLPNYASGSIQKYYINFVTTGDPNKGAAVDIQWPQWSAKKNILQIYATKAVIVADNFRAKSYEYLYNNIGIFRI 549
               SCOP domains d4be9b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeeeee..eeeeeeee.....hhhhh............eee..................hhhhhhhhhhhhhhhhhhhh.......eeeeeee........eeeeeee........hhhhh.hhhhhhhhhhhh...eeeee...hhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhh.ee..ee...eeeee...........hhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhh..........................hhhhhhhh.......eeeeee...hhhhhh......hhhhhhhhhhhhh....hhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.............hhhhhhh......hhhhhhhhhhhhhhhhhh.............hhhhhheeeee....eeeee...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4be9 B  13 TTVNVNYPEGEVVGVSVLGIESFRGVPFAQPPVGNLRLKPPVRYTENIGTKDTTGIGPSCPQMYLSTGNGELLFQLVGNLINIPLFQTATLSSEDCLTLNIQRPAGTTSNSSLPVLFWIFGGGFELGTNQYYDGIDLLTEGISLGEPFIFVAINYRVGGFGFLGGKEIKADGSSNLGLLDQRIALEWVADNIASFGGDPSKVTIWGESAGSISVFDQMALYGGNNKYKGKALFRGGIMNSGSVVPAAPVDGVKAQAIYDHVVSEAGCAGTSDTLACLRTVDYTKFLTAVNSVPGIVSYSSIALSYLPRPDGVVLIDSPEEIVKNKQYAAVPMIIGDQEDEGTLFAVLPNNITSTAKIVQYFQDLYFYNATKEQLTAFVNTYPTDITAGSPFNTGIFNELYPGFKRLAAILGDMTFTLARRAFLQLCSEVNPDVPSWSYLASYDYGFPFLGTFHATDILQVFYGVLPNYASGSIQKYYINFVTTGDPNKGAAVDIQWPQWSAKKNILQIYATKAVIVADNFRAKSYEYLYNNIGIFRI 549
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BE9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BE9)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q2TFW1_9PEZI | Q2TFW1)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q2TFW1_9PEZI | Q2TFW1: 4be4 4upd

(-) Related Entries Specified in the PDB File

4be4 CLOSED CONFORMATION OF O. PICEAE STEROL ESTERASE