4BC4 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH D-XYLULOSE

Authors :   R. D. Bunker, K. M. Loomes, E. N. Baker

Date :   01 Oct 12 (Deposition) - 28 Nov 12 (Release) - 30 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.79

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Transferase, Glucuronate Xylulokinase Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. D. Bunker, E. M. M. Bulloch, J. M. J. Dickson, K. M. Loomes, E. N. Baker
Structure And Function Of Human Xylulokinase, An Enzyme With Important Roles In Carbohydrate Metabolism
J. Biol. Chem. V. 288 1643 2013
PubMed-ID: 23179721 | Reference-DOI: 10.1074/JBC.M112.427997

Molecule 1 - XYLULOSE KINASE
	Chains	:	A, B, C
	EC Number	:	2.7.1.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEX
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	XYLULOKINASE, D-XYLULOKINASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 42)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	36	Mod. Amino Acid	SELENOMETHIONINE
3	XUL	3	Ligand/Ion	D-XYLULOSE

Biological Unit 1 (3, 14)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	XUL	1	Ligand/Ion	D-XYLULOSE

Biological Unit 2 (3, 14)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	XUL	1	Ligand/Ion	D-XYLULOSE

Biological Unit 3 (3, 14)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	XUL	1	Ligand/Ion	D-XYLULOSE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN B:97 , GLN B:98 , HIS B:99 , TRP B:137 , ARG B:170 , ASP B:280 , ASN B:281 , HOH B:2008	BINDING SITE FOR RESIDUE XUL B1531
2	AC2	SOFTWARE	GLN C:97 , GLN C:98 , HIS C:99 , TRP C:137 , ARG C:170 , ASP C:280 , ASN C:281 , HOH C:2007	BINDING SITE FOR RESIDUE XUL C1531
3	AC3	SOFTWARE	GLN A:97 , GLN A:98 , HIS A:99 , TRP A:137 , ARG A:170 , ASP A:280 , ASN A:281 , HOH A:2007	BINDING SITE FOR RESIDUE XUL A1532
4	AC4	SOFTWARE	SER A:251 , CYS A:252 , PRO A:324 , VAL A:325 , ASP A:326 , SER A:327	BINDING SITE FOR RESIDUE EDO A1533
5	AC5	SOFTWARE	SER C:251 , CYS C:252 , PRO C:324 , VAL C:325 , ASP C:326 , SER C:327 , HOH C:2227	BINDING SITE FOR RESIDUE EDO C1532
6	AC6	SOFTWARE	ILE B:131 , ASP B:133 , LYS B:178 , HOH B:2065 , HOH B:2093	BINDING SITE FOR RESIDUE EDO B1532

(no "SS Bond" information available for 4BC4)

Asymmetric Unit

No.	Residues
1	Thr A:383	-	Pro A:384
2	Thr B:383	-	Pro B:384
3	Thr C:383	-	Pro C:384

Asymmetric Unit (5, 15)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_055151	D	85	E	XYLB_HUMAN	Polymorphism	17118	A/B/C	D	85	E
2	UniProt	VAR_055152	D	133	N	XYLB_HUMAN	Polymorphism	2234610	A/B/C	D	133	N
3	UniProt	VAR_055153	D	139	E	XYLB_HUMAN	Polymorphism	151611	A/B/C	D	139	E
4	UniProt	VAR_055154	Y	262	N	XYLB_HUMAN	Polymorphism	196380	A/B/C	Y	262	N
5	UniProt	VAR_055155	N	348	D	XYLB_HUMAN	Polymorphism	2234622	A/B/C	N	348	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_055151	D	85	E	XYLB_HUMAN	Polymorphism	17118	A	D	85	E
2	UniProt	VAR_055152	D	133	N	XYLB_HUMAN	Polymorphism	2234610	A	D	133	N
3	UniProt	VAR_055153	D	139	E	XYLB_HUMAN	Polymorphism	151611	A	D	139	E
4	UniProt	VAR_055154	Y	262	N	XYLB_HUMAN	Polymorphism	196380	A	Y	262	N
5	UniProt	VAR_055155	N	348	D	XYLB_HUMAN	Polymorphism	2234622	A	N	348	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_055151	D	85	E	XYLB_HUMAN	Polymorphism	17118	B	D	85	E
2	UniProt	VAR_055152	D	133	N	XYLB_HUMAN	Polymorphism	2234610	B	D	133	N
3	UniProt	VAR_055153	D	139	E	XYLB_HUMAN	Polymorphism	151611	B	D	139	E
4	UniProt	VAR_055154	Y	262	N	XYLB_HUMAN	Polymorphism	196380	B	Y	262	N
5	UniProt	VAR_055155	N	348	D	XYLB_HUMAN	Polymorphism	2234622	B	N	348	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_055151	D	85	E	XYLB_HUMAN	Polymorphism	17118	C	D	85	E
2	UniProt	VAR_055152	D	133	N	XYLB_HUMAN	Polymorphism	2234610	C	D	133	N
3	UniProt	VAR_055153	D	139	E	XYLB_HUMAN	Polymorphism	151611	C	D	139	E
4	UniProt	VAR_055154	Y	262	N	XYLB_HUMAN	Polymorphism	196380	C	Y	262	N
5	UniProt	VAR_055155	N	348	D	XYLB_HUMAN	Polymorphism	2234622	C	N	348	D

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 4BC4)

(no "Exon" information available for 4BC4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:525
 aligned with XYLB_HUMAN | O75191 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:525
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
           XYLB_HUMAN     7 RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT 531
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeeeeeee....eeeeeeeehhhhhhhhh.....ee......eeeehhhhhhhhhhhhhhhhhh..hhh.eeeeeeee....eeeee.hhhhhhhh.....hhhhhhh......eee......hhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhheeeeeehhhhhhhhhhh.......hhhhh...ee....eehhhhhhhhh.hhhhhhh.......eeee.hhhhhhhhh.....eee..eehhhhhhhhh......eeeee...eeeeeee.........eeee.......eeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhheeeee..........eeeee.....ee...hhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------E-----------------------------------------------N-----E--------------------------------------------------------------------------------------------------------------------------N-------------------------------------------------------------------------------------D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc4 A   7 RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLmWVQALDIILEKmKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWmDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGmNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGmRLEEGDIAVSLGTSDTLFLWLQEPmPALEGHIFCNPVDSQHYmALLCFKNGSLmREKIRNESVSRSWSDFSKALQSTEmGNGGNLGFYFDVmEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFmAKRIHAEGLGYRVmSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQT 531
                                    16        26        36        46        56        66|       76  |     86        96       106       116       126       136 |     146       156       166       176       186       196       206       216  |    226       236       246       256       266       276       286 |     296       306      |316       326    |  336     | 346       356       366|      376   |   386       396       406       416|      426    |  436       446       456       466       476       486       496       506       516       526     
                                                                                       67-MSE      79-MSE                                                    138-MSE                                                                          219-MSE                                                              288-MSE                  313-MSE           331-MSE    342-MSE                  367-MSE      380-MSE                              417-MSE       431-MSE

Chain B from PDB  Type:PROTEIN  Length:525
 aligned with XYLB_HUMAN | O75191 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:525
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525     
           XYLB_HUMAN     6 PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ 530
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...eeeeeeee....eeeeeeeehhhhhhhhh.....ee......eeeehhhhhhhhhhhhhhhhhh..hhh.eeeeeeee....eeeee.hhhhhhhh.....hhhhhh.......eee......hhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhheeeeeehhhhhhhhhhh.....hhhhhh....ee....eehhhhhhhhh.hhhhhhh.......eeee.hhhhhhhhh.....eee..eehhhhhhhhh......eeeee...eeeeeee.........eeee.......eeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhheeeee..........eeeee.....ee...hhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------E-----------------------------------------------N-----E--------------------------------------------------------------------------------------------------------------------------N-------------------------------------------------------------------------------------D-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc4 B   6 PRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLmWVQALDIILEKmKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWmDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGmNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGmRLEEGDIAVSLGTSDTLFLWLQEPmPALEGHIFCNPVDSQHYmALLCFKNGSLmREKIRNESVSRSWSDFSKALQSTEmGNGGNLGFYFDVmEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFmAKRIHAEGLGYRVmSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ 530
                                    15        25        35        45        55        65 |      75   |    85        95       105       115       125       135  |    145       155       165       175       185       195       205       215   |   225       235       245       255       265       275       285  |    295       305       315       325     | 335      |345       355       365 |     375    |  385       395       405       415 |     425     | 435       445       455       465       475       485       495       505       515       525     
                                                                                        67-MSE      79-MSE                                                    138-MSE                                                                          219-MSE                                                              288-MSE                  313-MSE           331-MSE    342-MSE                  367-MSE      380-MSE                              417-MSE       431-MSE

Chain C from PDB  Type:PROTEIN  Length:524
 aligned with XYLB_HUMAN | O75191 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:524
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526    
           XYLB_HUMAN     7 RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ 530
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeeeeeee....eeeeeeeehhhhhhhhh.....ee......eeeehhhhhhhhhhhhhhhhhh..hhh.eeeeeeee....eeeee.hhhhhhhh.....hhhhhh.......eee......hhhhhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhheeeeeehhhhhhhhhhh.....hhhhhh....ee....eehhhhhhhhh.hhhhhhh.......eeee.hhhhhhhhh.....eee..eehhhhhhhhh......eeeee...eeeeeee.........eeee.......eeeeeee..hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhheeeee..........eeeee.....ee...hhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------E-----------------------------------------------N-----E--------------------------------------------------------------------------------------------------------------------------N-------------------------------------------------------------------------------------D-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bc4 C   7 RRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLmWVQALDIILEKmKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWmDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGmNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGmRLEEGDIAVSLGTSDTLFLWLQEPmPALEGHIFCNPVDSQHYmALLCFKNGSLmREKIRNESVSRSWSDFSKALQSTEmGNGGNLGFYFDVmEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFmAKRIHAEGLGYRVmSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQ 530
                                    16        26        36        46        56        66|       76  |     86        96       106       116       126       136 |     146       156       166       176       186       196       206       216  |    226       236       246       256       266       276       286 |     296       306      |316       326    |  336     | 346       356       366|      376   |   386       396       406       416|      426    |  436       446       456       466       476       486       496       506       516       526    
                                                                                       67-MSE      79-MSE                                                    138-MSE                                                                          219-MSE                                                              288-MSE                  313-MSE           331-MSE    342-MSE                  367-MSE      380-MSE                              417-MSE       431-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4BC4)

(no "CATH Domain" information available for 4BC4)

(no "Pfam Domain" information available for 4BC4)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (XYLB_HUMAN | O75191)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016773	phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0004856	xylulokinase activity	Catalysis of the reaction: D-xylulose + ATP = D-xylulose 5-phosphate + ADP + 2 H(+).
biological process
	GO:0042732	D-xylose metabolic process	The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0046835	carbohydrate phosphorylation	The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
	GO:0006091	generation of precursor metabolites and energy	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
	GO:0019640	glucuronate catabolic process to xylulose 5-phosphate	The chemical reactions and pathways resulting in the breakdown of glucuronate into other compounds, including xylulose 5-phosphate.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0005998	xylulose catabolic process	The chemical reactions and pathways resulting in the breakdown of xylulose, the ketopentose threo-2-pentulose.
	GO:0005997	xylulose metabolic process	The chemical reactions and pathways involving xylulose, the ketopentose threo-2-pentulose.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Thr A:383 - Pro A:384	[ RasMol ]
		Thr B:383 - Pro B:384	[ RasMol ]
		Thr C:383 - Pro C:384	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	4bc4
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		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	XYLB_HUMAN \| O75191
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.7.1.17
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	XYLB_HUMAN \| O75191
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	XYLB_HUMAN \| O75191	:	4bc2 4bc3 4bc5

4b6t	CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE WITH BOUND 5 -DEOXY-5-FLUORO-D-XYLULOSE
4b6y	CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE WITH BOUND D -XYLULOSE
4bc2	CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH D-XYLULOSE AND ADENOSINE DIPHOSPHATE
4bc3	CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE
4bc5	CRYSTAL STRUCTURE OF HUMAN D-XYLULOKINASE IN COMPLEX WITH INHIBITOR 5-DEOXY-5-FLUORO-D-XYLULOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 42)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (5, 15)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File