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(-) Description

Title :  CRYSTAL STRUCTURE RAP2B (SMA2266) FROM SERRATIA MARCESCENS
 
Authors :  V. Srikannathasan, W. N. Hunter
Date :  13 Aug 12  (Deposition) - 22 Aug 12  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. English, K. Trunk, V. A. Rao, V. Srikannathasan, W. N. Hunter, S. J. Coulthurst
New Secreted Toxins And Immunity Proteins Encoded Within Th Type Vi Secretion System Gene Cluster Of Serratia Marcescens.
Mol. Microbiol. V. 86 921 2012
PubMed-ID: 22957938  |  Reference-DOI: 10.1111/MMI.12028

(-) Compounds

Molecule 1 - SMA2266
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Organism Scientific: SERRATIA MARCESCENS
    Organism Taxid: 615

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4B6I)

(-) Sites  (0, 0)

(no "Site" information available for 4B6I)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:41 -A:101
2B:41 -B:101
3C:41 -C:101
4D:41 -D:101

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4B6I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4B6I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4B6I)

(-) Exons   (0, 0)

(no "Exon" information available for 4B6I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:100
 aligned with J9PBR6_SERMA | J9PBR6 from UniProtKB/TrEMBL  Length:102

    Alignment length:100
                                    12        22        32        42        52        62        72        82        92       102
         J9PBR6_SERMA     3 MENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 102
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4b6i A  20 MENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 119
                                    29        39        49        59        69        79        89        99       109       119


Chain B from PDB  Type:PROTEIN  Length:100
 aligned with J9PBR6_SERMA | J9PBR6 from UniProtKB/TrEMBL  Length:102

    Alignment length:100
                                    12        22        32        42        52        62        72        82        92       102
         J9PBR6_SERMA     3 MENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 102
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4b6i B  20 MENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 119
                                    29        39        49        59        69        79        89        99       109       119


Chain C from PDB  Type:PROTEIN  Length:102
 aligned with J9PBR6_SERMA | J9PBR6 from UniProtKB/TrEMBL  Length:102

    Alignment length:102
                                    10        20        30        40        50        60        70        80        90       100  
         J9PBR6_SERMA     1 GHMENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 102
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4b6i C  18 GHMENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 119
                                    27        37        47        57        67        77        87        97       107       117  


Chain D from PDB  Type:PROTEIN  Length:102
 aligned with J9PBR6_SERMA | J9PBR6 from UniProtKB/TrEMBL  Length:102

    Alignment length:102
                                    10        20        30        40        50        60        70        80        90       100  
         J9PBR6_SERMA     1 GHMENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 102
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4b6i D  18 GHMENSLNALSQEALYKNWLTSRCIGKSTDSERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTLDCLSLQNASEAETIFERYSK 119
                                    27        37        47        57        67        77        87        97       107       117
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4B6I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B6I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B6I)

(-) Gene Ontology  (0, 0)

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