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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AMYLOID-BETA BINDING SINGLE CHAIN ANTIBODY G7
 
Authors :  D. X. Beringer, B. Dorresteijn, L. Rutten, H. Wienk, M. El Khattabi, L. M. J. Kroon-Batenburg, C. T. Verrips
Date :  27 Jul 12  (Deposition) - 07 Aug 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.19
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immune System, Alzheimer'S Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. X. Beringer, B. Dorresteijn, L. Rutten, H. Wienk, M. El Khattabi, L. M. J. Kroon-Batenburg, C. T. Verrips
Crystal Structure Of An Amyloid-Beta Binding Single Chain Antibody G7
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ANTIBODY G7
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMEK220
    Expression System Strain: TG1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:17 , GLN A:81 , HOH A:2036 , THR B:112 , GLN B:113BINDING SITE FOR RESIDUE CL B1119
2AC2SOFTWARETHR A:112 , GLN A:113 , HOH A:2161 , SER B:17 , GLN B:81BINDING SITE FOR RESIDUE CL A1119
3AC3SOFTWARESER B:52 , SER B:53 , GLY B:54BINDING SITE FOR RESIDUE GOL B1120
4AC4SOFTWAREVAL A:12 , GLN A:13BINDING SITE FOR RESIDUE CL A1120
5AC5SOFTWAREGLN B:39 , GLN B:44 , ARG B:45BINDING SITE FOR RESIDUE CL B1121

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:22 -A:95
2B:22 -B:95

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4B41)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4B41)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4B41)

(-) Exons   (0, 0)

(no "Exon" information available for 4B41)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4b41a_ A: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee.....eeeeee.hhhhhh...eeeeee......eeeeee.....eee.hhhh..eeeee.....eeeeee...hhhhheeeeeee..............eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4b41 A   2 VQLVESGGGLVQPGGSLRLSCAASRSIISNNAMGWYRQAPGKQRELVARISSGGRTTYADSVKGRFTISRDNAKTTVYLQMNSLKPEDTAVYYCNAASLVRGPLDHWGQGTQVTVSS 118
                                    11        21        31        41        51        61        71        81        91       101       111       


Chain B from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains d4b41b_ B: automated matches                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee.....eeeeee.hhhhhhhh.eeeeee......eeeeee.....eee.hhhh..eeeee.....eeeeee...hhhhheeeeeee..............eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 4b41 B   2 VQLVESGGGLVQPGGSLRLSCAASRSIISNNAMGWYRQAPGKQRELVARISSGGRTTYADSVKGRFTISRDNAKTTVYLQMNSLKPEDTAVYYCNAASLVRGPLDHWGQGTQVTVSS 118
                                    11        21        31        41        51        61        71        81        91       101       111
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B41)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B41)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4B41)

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  4b41
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