4AZW - JenaLib

Title :   CRYSTAL STRUCTURE OF MONOMERIC WBDD.

Authors :   G. Hagelueken, H. Huang, J. H. Naismith

Date :   26 Jun 12 (Deposition) - 26 Sep 12 (Release) - 14 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.47

Chains :   Asym./Biol. Unit : A

Keywords :   Transferase, Methyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Hagelueken, H. Huang, B. R. Clarke, T. Lebl, C. Whitfield, J. H. Naismith
Structure Of Wbdd; A Bifunctional Kinase And Methyltransferase That Regulates The Chain Length Of The O Antigen In Escherichia Coli O9A.
Mol. Microbiol. V. 86 730 2012
PubMed-ID: 22970759 | Reference-DOI: 10.1111/MMI.12014

Compounds

Molecule 1 - WBDD
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 2-458
	Gene	:	ORF708
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 4)

Asymmetric/Biological Unit (3, 4)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SAM	1	Ligand/Ion	S-ADENOSYLMETHIONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:229 , HIS A:237 , ARG A:241 , TYR A:243 , LYS A:252 , PHE A:254 , GLU A:274 , MET A:308 , GLU A:309 , LYS A:310 , LEU A:311 , LEU A:315 , ASN A:356 , ILE A:368 , ASP A:369 , MG A:1452 , MG A:1453 , HOH A:2041 , HOH A:2055 , HOH A:2069	BINDING SITE FOR RESIDUE ATP A1450
2	AC2	SOFTWARE	TYR A:16 , GLN A:17 , ARG A:36 , GLY A:61 , ALA A:63 , PHE A:67 , ASP A:82 , PHE A:83 , GLN A:84 , ASN A:87 , GLY A:108 , ARG A:109 , ILE A:110 , GLU A:111 , LEU A:128 , SER A:129 , VAL A:130	BINDING SITE FOR RESIDUE SAM A1451
3	AC3	SOFTWARE	ASN A:356 , ASP A:369 , ATP A:1450 , HOH A:2069	BINDING SITE FOR RESIDUE MG A1452
4	AC4	SOFTWARE	GLU A:274 , ASP A:369 , ATP A:1450 , HOH A:2055	BINDING SITE FOR RESIDUE MG A1453

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:413
 aligned with WBDD2_ECOLX | Q47592 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:445
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444     
          WBDD2_ECOLX     5 LNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPLYWGVSQPDDPRELIEQCAFYRLIGEFDTHLSPVPRPMYLVSNHRVLINDFNQPFQHWQNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERWNFALLLALFEKK 449
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhh.......eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh..hhhhhh....eeeeeee..-------.eeeeee..eeee..eeee..eee..............eeeee...eeeeeee..hhhhh.hhhhhhhhhhhhhhhhhhhhh.........eeeeee...eeeeeee....eehhhhhhh....hhhhhhhhhhhhhhhhhhh..ee...hhh.eee.....eee.hhh.ee..------hhhhhhhhhhhhhhhh-------------------...hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azw A   5 LNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFD-------RPMYLVSNHRVLINDFNQPFQHWQNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTT------PTNLVQSFFVFVNELF-------------------LPQPWSNWLYAVWQEPVERWNFALLLALFEKK 449
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194|      204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374 |     384       394   |     -         -   |   424       434       444     
                                                                                                                                                                                                                        195     203                                                                                                                                                                          376    383            398                 418

Chain A from PDB  Type:PROTEIN  Length:413
 aligned with WBDD_ECOLX | J7I4B7 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:445
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444     
           WBDD_ECOLX     5 LNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFDTHLSPVPRPMYLVSNHRVLINDFNQPFQHWQNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSNWLYAVWQEPVERWNFVLLLALFEKK 449
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.........hhhhh......hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhh.......eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.........hhhhh..hhhhhh....eeeeeee..-------.eeeeee..eeee..eeee..eee..............eeeee...eeeeeee..hhhhh.hhhhhhhhhhhhhhhhhhhhh.........eeeeee...eeeeeee....eehhhhhhh....hhhhhhhhhhhhhhhhhhh..ee...hhh.eee.....eee.hhh.ee..------hhhhhhhhhhhhhhhh-------------------...hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azw A   5 LNTLVSELPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAFYRLIGEFD-------RPMYLVSNHRVLINDFNQPFQHWQNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKKGFWHDDVRPWNVMVDARQHARLIDFGSIVTT------PTNLVQSFFVFVNELF-------------------LPQPWSNWLYAVWQEPVERWNFALLLALFEKK 449
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194|      204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374 |     384       394   |     -         -   |   424       434       444     
                                                                                                                                                                                                                        195     203                                                                                                                                                                          376    383            398                 418

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 26)

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	4azw
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

4ax8	MEDIUM RESOLUTION STRUCTURE OF THE BIFUNCTIONAL KINASE- METHYLTRANSFERASE WBDD
4azs	HIGH RESOLUTION (2.2 A) CRYSTAL STRUCTURE OF WBDD.
4azt	CO-CRYSTAL STRUCTURE OF WBDD AND KINASE INHIBITOR LY294002.
4azv	CO-CRYSTAL STRUCTURE OF WBDD AND KINASE INHIBITOR GW435821X.

Description