4AZN - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   MURINE EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5), APO FORM, POLY-HIS TAG-MEDIATED CRYSTAL PACKING

Authors :   B. Sanson, T. Wang, J. Sun, M. Kaczocha, I. Ojima, D. Deutsch, H. Li

Date :   26 Jun 12 (Deposition) - 07 Aug 13 (Release) - 26 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.51

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Lipid Binding Protein, Lipid Carrier Protein, Endocannabinoid, Beta-Barrel, Beta-Clamshell, Domain Swapping (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Sanson, T. Wang, J. Sun, L. Wang, M. Kaczocha, I. Ojima, D. Deutsch, H. Li
Crystallographic Study Of Fabp5 As An Intracellular Endocannabinoid Transporter.
Acta Crystallogr. , Sect. D V. 70 290 2014
PubMed-ID: 24531463 | Reference-DOI: 10.1107/S1399004713026795

Molecule 1 - FATTY ACID-BINDING PROTEIN, EPIDERMAL
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET-28A
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	MCG1638, FABP5, EPIDERMAL-TYPE FATTY ACID- BINDING PROTEIN, E-FABP, PSORIASIS-ASSOCIATED FATTY ACID- BINDING PROTEIN HOMOLOG, PA-FABP
	Tissue	:	EPIDERMIS

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4AZN)

(no "Site" information available for 4AZN)

(no "SS Bond" information available for 4AZN)

(no "Cis Peptide Bond" information available for 4AZN)

(no "SAP(SNP)/Variant" information available for 4AZN)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FABP	PS00214	Cytosolic fatty-acid binding proteins signature.	FABP5_MOUSE	9-26	2	A:9-26 B:9-26

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FABP	PS00214	Cytosolic fatty-acid binding proteins signature.	FABP5_MOUSE	9-26	1	A:9-26 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FABP	PS00214	Cytosolic fatty-acid binding proteins signature.	FABP5_MOUSE	9-26	1	- B:9-26

(no "Exon" information available for 4AZN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:136
 aligned with FABP5_MOUSE | Q05816 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
          FABP5_MOUSE     - --MASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKV 134
               SCOP domains d4azna_ A: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhheeeeeeeeehhhhhhhhh..hhhhhhhhh....eeeeee...eeeeeee...eeeeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------FABP  PDB: A:9-26 ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azn A  -1 SHMASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKV 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128

Chain A from PDB  Type:PROTEIN  Length:136
 aligned with Q497I3_MOUSE | Q497I3 from UniProtKB/TrEMBL  Length:135

    Alignment length:136
                              1                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128      
         Q497I3_MOUSE     - --MASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKV 134
               SCOP domains d4azna_ A: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhheeeeeeeeehhhhhhhhh..hhhhhhhhh....eeeeee...eeeeeee...eeeeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azn A  -1 SHMASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKV 134
                                     8        18        28        38        48        58        68        78        88        98       108       118       128

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with FABP5_MOUSE | Q05816 from UniProtKB/Swiss-Prot  Length:135

    Alignment length:137
                              1                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       
          FABP5_MOUSE     - --MASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKVQ 135
               SCOP domains d4aznb_ B: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhheeeeeeeeehhhhhhhhh..hhhhhhhhhh...eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------FABP  PDB: B:9-26 ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azn B  -1 SHMASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKVQ 135
                                     8        18        28        38        48        58        68        78        88        98       108       118       128

Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q497I3_MOUSE | Q497I3 from UniProtKB/TrEMBL  Length:135

    Alignment length:137
                              1                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       
         Q497I3_MOUSE     - --MASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKVQ 135
               SCOP domains d4aznb_ B: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhheeeeeeeeehhhhhhhhh..hhhhhhhhhh...eeeeeee..eeeeeee....eeeeeee....eeee.....eeeeeeeee..eeeeeeee..eeeeeeeeee..eeeeeeee..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4azn B  -1 SHMASLKDLEGKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCTRVYEKVQ 135
                                     8        18        28        38        48        58        68        78        88        98       108       118       128

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Lipocalins (514)

Superfamily: Lipocalins (514)

Family: Fatty acid binding protein-like (183)

Protein domain: automated matches (26)

Mouse (Mus musculus) [TaxId: 10090] (4)

1a	d4azna_	A:
1b	d4aznb_	B:

(no "CATH Domain" information available for 4AZN)

(no "Pfam Domain" information available for 4AZN)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q497I3_MOUSE | Q497I3)

molecular function
	GO:0005504	fatty acid binding	Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0009611	response to wounding	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Chain A,B (FABP5_MOUSE | Q05816)

molecular function
	GO:0005504	fatty acid binding	Interacting selectively and non-covalently with fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0015758	glucose transport	The directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0006656	phosphatidylcholine biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
	GO:0009611	response to wounding	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4azn)

	Sites
(no "Sites" information available for 4azn)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4azn)

Biological Units
	Complete Structure
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		Biological Unit 2	[ Jena3D ]

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	4azn
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
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	FABP5_MOUSE \| Q05816
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	Q497I3_MOUSE \| Q497I3
		Comparative Protein Structure Models	:	ModBase
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		Protein-protein Interaction	:	DIP
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	FABP5_MOUSE \| Q05816
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	Q497I3_MOUSE \| Q497I3
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	FABP5_MOUSE \| Q05816	:	4azo 4azp 4azq
	Q497I3_MOUSE \| Q497I3	:	4azo 4azp

4azm	HUMAN EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5) IN COMPLEX WITH THE INHIBITOR BMS-309413
4azo	MURINE EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5), APO FORM, POLY-HIS TAG REMOVED
4azp	MURINE EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5) IN COMPLEX WITH THE ENDOCANNABINOID ANANDAMIDE
4azq	MURINE EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5) IN COMPLEX WITH THE ENDOCANNABINOID 2-ARACHIDONOYLGLYCEROL
4azr	HUMAN EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5) IN COMPLEX WITH THE ENDOCANNABINOID ANANDAMIDE

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 17)

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