4AW2 - JenaLib

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Title :   CRYSTAL STRUCTURE OF CDC42 BINDING PROTEIN KINASE ALPHA (MRCK ALPHA)

Authors :   J. M. Elkins, J. R. C. Muniz, I. Tan, T. Leung, L. Lafanechere, R. Prudent K. Abdul Azeez, M. Szklarz, C. Phillips, J. Wang, F. Von Delft, C. Bou A. Edwards, S. Knapp

Date :   30 May 12 (Deposition) - 20 Jun 12 (Release) - 20 Jun 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Transferase, Cdc42Bpa (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Elkins, J. R. C. Muniz, I. Tan, T. Leung, L. Lafanechere, R. Prudent, K. Abdul Azeez, M. Szklarz, C. Phillips, J. Wang, F. Von Delft, C. Bountra, A. Edwards, S. Knapp
Cdc42 Binding Protein Kinase Alpha (Mrck Alpha)
To Be Published
PubMed: search

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE MRCK ALPHA
	Chains	:	A
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-CTH0
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	KINASE DOMAIN, RESIDUES 2-424
	Mutation	:	YES
	Organism Common	:	NORWAY RAT
	Organism Scientific	:	RATTUS NORVEGICUS
	Organism Taxid	:	10116
	Synonym	:	CDC42-BINDING PROTEIN KINASE ALPHA, MYOTONIC DYSTROPHY KINASE-RELATED CDC42-BINDING KINASE ALPHA, MRCK ALPHA, MYOTONIC DYSTROPHY PROTEIN KINASE-LIKE ALPHA CDC42 BINDING PROTEIN KINASE ALPHA

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	22E	1	Ligand/Ion	5,11-DIMETHYL-1-OXO-2,6-DIHYDRO-1H-PYRIDO[4,3-B]CARBAZOL-9-YL BENZOATE
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	22E	2	Ligand/Ion	5,11-DIMETHYL-1-OXO-2,6-DIHYDRO-1H-PYRIDO[4,3-B]CARBAZOL-9-YL BENZOATE
2	EDO	8	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:33 , ILE A:36 , LYS A:68 , GLN A:69 , ARG A:71 , HIS A:73 , GLN A:145 , ASP A:146 , ASP A:147 , LYS A:339 , HOH A:2099 , HOH A:2210	BINDING SITE FOR RESIDUE 22E A 500
2	AC2	SOFTWARE	TYR A:56 , TRP A:59 , ARG A:123 , LEU A:397 , PRO A:398 , HOH A:2202	BINDING SITE FOR RESIDUE EDO A1418
3	AC3	SOFTWARE	LYS A:106 , LEU A:108 , ALA A:120 , CYS A:121 , GLU A:125 , GLY A:221 , HOH A:2063	BINDING SITE FOR RESIDUE EDO A1419
4	AC4	SOFTWARE	ALA A:104 , TYR A:156 , TYR A:157 , HOH A:2105	BINDING SITE FOR RESIDUE EDO A1420
5	AC5	SOFTWARE	GLU A:29 , ARG A:71 , CYS A:408 , LEU A:410 , HOH A:2206	BINDING SITE FOR RESIDUE EDO A1421

(no "SS Bond" information available for 4AW2)

(no "Cis Peptide Bond" information available for 4AW2)

(no "SAP(SNP)/Variant" information available for 4AW2)

Asymmetric Unit (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	MRCKA_RAT	83-106	1	A:83-106
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	MRCKA_RAT	197-209	1	A:197-209
3	AGC_KINASE_CTER	PS51285	AGC-kinase C-terminal domain profile.	MRCKA_RAT	344-414	1	A:344-414

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PROTEIN_KINASE_ATP	PS00107	Protein kinases ATP-binding region signature.	MRCKA_RAT	83-106	2	A:83-106
2	PROTEIN_KINASE_ST	PS00108	Serine/Threonine protein kinases active-site signature.	MRCKA_RAT	197-209	2	A:197-209
3	AGC_KINASE_CTER	PS51285	AGC-kinase C-terminal domain profile.	MRCKA_RAT	344-414	2	A:344-414

(no "Exon" information available for 4AW2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:398
 aligned with MRCKA_RAT | O54874 from UniProtKB/Swiss-Prot  Length:1732

    Alignment length:416
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
            MRCKA_RAT     2 SGEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTDTSNFDVDDDCLKNSETMPPPTHTAFSGHHLPFVGFTYTSSCVLSDRSCLR 417
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeee...eeeeeeee.....eeeeeeeehhhhhhh....hhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee......hhhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.........hhhhhhhhhh...hhhhh.....hhhhhhhhhhh.....hhhhh....................------------------...hhhhh...ee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------PROTEIN_KINASE_ATP      ------------------------------------------------------------------------------------------PROTEIN_KINAS--------------------------------------------------------------------------------------------------------------------------------------AGC_KINASE_CTER  PDB: A:344-414 UniProt: 344-414                       --- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aw2 A   2 SGEVRLRQLEQFILDGPAQTNGQCFSVETLLDILICLYDECNNSPLRREKNILEYLEWAKPFTSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIRNCEAPYIPEVSSPTDTSNFDVD------------------SGHHLPFVGFTYTSSCVLSDRSCLR 417
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371  |      -         - |     401       411      
                                                                                                                                                                                                                                                                                                                                                                                                              374                393

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AW2)

(no "CATH Domain" information available for 4AW2)

(no "Pfam Domain" information available for 4AW2)

Asymmetric Unit(hide GO term definitions)

Chain A (MRCKA_RAT | O54874)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0031532	actin cytoskeleton reorganization	A process that is carried out at the cellular level which results in dynamic structural changes to the arrangement of constituent parts of cytoskeletal structures comprising actin filaments and their associated proteins.
	GO:0031032	actomyosin structure organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and myosin or paramyosin. The myosin may be organized into filaments.
	GO:0016477	cell migration	The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
	GO:0007010	cytoskeleton organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
	GO:0035556	intracellular signal transduction	The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0051056	regulation of small GTPase mediated signal transduction	Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
cellular component
	GO:0042641	actomyosin	Any complex of actin, myosin, and accessory proteins.
	GO:0031252	cell leading edge	The area of a motile cell closest to the direction of movement.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Biological Unit
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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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