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(-) Description

Title :  STRUCTURE OF THE ORF273 PROTEIN FROM THE ACIDIANUS TWO-TAILED VIRUS
 
Authors :  C. Felisberto-Rodrigues, M. Ortiz-Lombardia
Date :  09 May 12  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Archaeal Virus, Extremophiles, Bicaudavirus, Hyper- Thermostability (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Felisberto-Rodrigues, S. Blangy, A. Goulet, G. Vestergaard, C. Cambillau, R. A. Garrett, M. Ortiz-Lombardia
Crystal Structure Of Atv(Orf273), A New Fold For A Thermo- And Acido-Stable Protein From The Acidianus Two-Tailed Virus.
Plos One V. 7E45847 2012
PubMed-ID: 23056221  |  Reference-DOI: 10.1371/JOURNAL.PONE.0045847

(-) Compounds

Molecule 1 - STRUCTURAL PROTEIN ORF273
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: T7 IQ PLYSS
    Expression System Vector: PET28A
    Expression System Vector Type: PLASMID
    Organism Scientific: ACIDIANUS TWO-TAILED VIRUS
    Organism Taxid: 315953

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ATS)

(-) Sites  (0, 0)

(no "Site" information available for 4ATS)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:250 -A:263

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ATS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Y273_ATV | Q3V4T6 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:245
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264     
             Y273_ATV    25 TNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILRDGKIYPASDYDIEVEKGKRSANDIYAFVETDVTRDFDEFLFDIDYGLPSISDILKFYLEKAGFRIANEVPTPNLKYYIHAVVEFGEDRPQYLAVNIYDIDSLARALRIPQIVEQKLGNKPRTITADEFNDIERIVAEEQPILAGYTYDEALRIPYHYYVDHNNSFKDDALKIAHAYLQLFPTPYQVCYEWKARWFNKIDCLKLERL 269
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.------------.eeee....eeehhhhhhhhhh...hhh.eeeeeeeeee.hhhhhhhhhhhh..hhhhhhhhhhhhh..ee..........eeeeeeeee....eeeeeeeeeehhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeeeee....eeeehhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ats A  25 TNDEEKLADIVENEIEKEIRK------------YYYILRDGKIYPASDYDIEVEKGKRSANDIYAFVETDVTRDFDEFLFDIDYGLPSISDILKFYLEKAGFRIANEVPTPNLKYYIHAVVEFGEDRPQYLAVNIYDIDSLARALRIPQIVEQKLGNKPRTITADEFNDIERIVAEEQPILAGYTYDEALRIPYHYYVDHNNSFKDDALKIAHAYLQLFPTPYQVCYEWKARWFNKIDCLKLERL 269
                                    34        44|        -   |    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264     
                                               45           58
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ATS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ATS)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Y273_ATV | Q3V4T6)
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  4ats
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  Y273_ATV | Q3V4T6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y273_ATV | Q3V4T6: 4art

(-) Related Entries Specified in the PDB File

4art STRUCTURE OF THE ORF273 PROTEIN FROM THE ACIDIANUS TWO -TAILED VIRUS