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(-) Description

Title :  PSEUDOMONAS AERUGINOSA PHOSPHORYLCHOLINE PHOSPHATASE. ORTHORHOMBIC FORM
 
Authors :  L. Infantes, L. H. Otero, A. Albert
Date :  27 Apr 12  (Deposition) - 22 Aug 12  (Release) - 31 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Hydrolase, Had Superfamily, Alkylammonium Compounds (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Infantes, L. H. Otero, P. R. Beassoni, C. Boetsch, A. T. Lisa, C. E. Domenech, A. Albert
The Structural Domains Of Pseudomonas Aeruginosa Phosphorylcholine Phosphatase Cooperate In Substrate Hydrolysis: 3D Structure And Enzymatic Mechanism.
J. Mol. Biol. V. 423 503 2012
PubMed-ID: 22922065  |  Reference-DOI: 10.1016/J.JMB.2012.07.024

(-) Compounds

Molecule 1 - PHOSPHORYLCHOLINE PHOSPHATASE
    Chains: A, B, C, D
    EC Number: 3.1.3.75
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15-PCHP
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: CODONPLUS
    Expression System Vector: PET15
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 23-349
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1BTB10Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL4Ligand/IonCHLORIDE ION
3MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1BTB5Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1BTB5Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL-1Ligand/IonCHLORIDE ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:31 , ASP A:33 , ASP A:262 , HOH A:2011 , HOH A:2012 , HOH A:2015BINDING SITE FOR RESIDUE MG A1328
02AC2SOFTWAREASP B:31 , ASP B:33 , ASP B:262 , HOH B:2013 , HOH B:2015 , HOH B:2017BINDING SITE FOR RESIDUE MG B1328
03AC3SOFTWAREASP C:31 , ASP C:33 , ASP C:262 , HOH C:2009 , HOH C:2010 , HOH C:2011BINDING SITE FOR RESIDUE MG C1328
04AC4SOFTWAREASP D:31 , ASP D:33 , ASP D:262 , HOH D:2019 , HOH D:2020 , HOH D:2023BINDING SITE FOR RESIDUE MG D1328
05AC5SOFTWAREASP A:31 , ALA A:167 , LYS A:242 , SER A:266 , BTB A:1330 , HOH A:2014BINDING SITE FOR RESIDUE CL A1329
06AC6SOFTWAREASP B:31 , ALA B:167 , LYS B:242 , SER B:266 , BTB B:1330 , HOH B:2014BINDING SITE FOR RESIDUE CL B1329
07AC7SOFTWAREASP C:31 , ALA C:167 , LYS C:242 , SER C:266 , BTB C:1330 , HOH C:2009 , HOH C:2010BINDING SITE FOR RESIDUE CL C1329
08AC8SOFTWAREALA D:167 , LYS D:242 , SER D:266 , BTB D:1330 , HOH D:2019 , HOH D:2022BINDING SITE FOR RESIDUE CL D1329
09AC9SOFTWAREASP A:40 , GLU A:43 , TYR A:95 , ALA A:167 , ALA A:168 , THR A:263 , CL A:1329 , HOH A:2012 , HOH A:2014 , HOH A:2098BINDING SITE FOR RESIDUE BTB A1330
10BC1SOFTWAREASP B:33 , ASP B:40 , GLU B:42 , GLU B:43 , TYR B:95 , ALA B:167 , THR B:263 , CL B:1329 , HOH B:2015 , HOH B:2021 , HOH B:2033BINDING SITE FOR RESIDUE BTB B1330
11BC2SOFTWAREASP C:33 , ASP C:40 , GLU C:43 , TYR C:95 , ALA C:167 , THR C:263 , CL C:1329 , BTB C:1332 , HOH C:2009BINDING SITE FOR RESIDUE BTB C1330
12BC3SOFTWAREASP D:33 , ASP D:40 , GLU D:43 , TYR D:95 , ALA D:167 , THR D:263 , CL D:1329 , HOH D:2020 , HOH D:2029BINDING SITE FOR RESIDUE BTB D1330
13BC4SOFTWAREASP A:90 , ASP A:91 , MET A:239 , ASP A:265 , HOH A:2115 , TRP B:233BINDING SITE FOR RESIDUE BTB A1331
14BC5SOFTWARELYS A:211 , ALA A:214 , GLU A:215 , ASP B:90 , ASP B:91 , MET B:239BINDING SITE FOR RESIDUE BTB B1331
15BC6SOFTWAREASP C:90 , ASP C:91 , MET C:92 , MET C:239 , HOH C:2086 , HOH C:2087 , TRP D:233BINDING SITE FOR RESIDUE BTB C1331
16BC7SOFTWAREASP D:90 , ASP D:91 , ASP D:132 , ASP D:265BINDING SITE FOR RESIDUE BTB D1331
17BC8SOFTWAREGLU A:43 , TYR A:84 , CYS A:87 , GLU A:88 , HOH A:2036BINDING SITE FOR RESIDUE BTB A1332
18BC9SOFTWAREGLU C:43 , TYR C:84 , CYS C:87 , BTB C:1330BINDING SITE FOR RESIDUE BTB C1332

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:87 -A:94
2B:87 -B:94
3C:87 -C:94

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Thr A:234 -Pro A:235
2Thr B:234 -Pro B:235
3Thr C:234 -Pro C:235
4Thr D:234 -Pro D:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AS3)

(-) Exons   (0, 0)

(no "Exon" information available for 4AS3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
 aligned with Q9HTR2_PSEAE | Q9HTR2 from UniProtKB/TrEMBL  Length:349

    Alignment length:327
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       
         Q9HTR2_PSEAE    23 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 349
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.....eeee......ee.hhhhhhhhhhhh.........hhhhh............hhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee..eeeeeee...eehhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhh...hhh.eeeeeeeee......eehhhhhhhhh...hhhhh..eeeeeee.....hhhhhhhhhhhh.......eeee.hhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhhhhhhhhh.........eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4as3 A   1 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       


Chain B from PDB  Type:PROTEIN  Length:327
 aligned with Q9HTR2_PSEAE | Q9HTR2 from UniProtKB/TrEMBL  Length:349

    Alignment length:327
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       
         Q9HTR2_PSEAE    23 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 349
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee......ee.hhhhhhhhhhhhh........hhhhh............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....eeeeeee..eeeeeee...eehhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhh...hhh.eeeeeeeee......eehhhhhhhh...hhhhhh..eeeeeee.....hhhhhhhhhhhh.......eeee.hhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhhhhhhh.........eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4as3 B   1 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       


Chain C from PDB  Type:PROTEIN  Length:327
 aligned with Q9HTR2_PSEAE | Q9HTR2 from UniProtKB/TrEMBL  Length:349

    Alignment length:327
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       
         Q9HTR2_PSEAE    23 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 349
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee......ee..hhhhhhhhhhhh........hhhhh............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeeee..eeeeeee...eehhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhh...hhh.eeee.eeee......eehhhhhhhh...hhhhhh..eeeeee......hhhhhhhhhhhh.......eeee.hhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhhhhhhh.........eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4as3 C   1 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       


Chain D from PDB  Type:PROTEIN  Length:327
 aligned with Q9HTR2_PSEAE | Q9HTR2 from UniProtKB/TrEMBL  Length:349

    Alignment length:327
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       
         Q9HTR2_PSEAE    23 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 349
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee......ee.hhhhhhhhhhhhh...hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeeee....eeeeee...eehhhhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhhhhh...hhh.eeee.eeee......eehhhhhhhhh..hhhhhh..eeeeee......hhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhhhhh.........eeeehhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4as3 D   1 TELEHWPAPAARQLNALIEANANKGAYAVFDMDNTSYRYDLEESLLPYLEMKGVLTRDRLDPSLKLIPFKDQAGHKESLFSYYYRLCEIDDMVCYPWVAQVFSGFTLRELKGYVDELMAYGKPIPATYYDGDKLATLDVEPPRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIGVTTLLKNRKTGELTTARKQIAEGKYDPKANLDLEVTPYLWTPATWMAGKQAAILTYIDRWKRPILVAGDTPDSDGYMLFNGTAENGVHLWVNRKAKYMEQINGMIKQHSAAQAKAGLPVTADRNWVIVTPEQIQ 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AS3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AS3)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9HTR2_PSEAE | Q9HTR2)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  4as3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HTR2_PSEAE | Q9HTR2: 4as2

(-) Related Entries Specified in the PDB File

4as2 PSEUDOMONAS AERUGINOSA PHOSPHORYLCHOLINE PHOSPHATASE. MONOCLINIC FORM