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(-) Description

Title :  OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP
 
Authors :  S. Franceschini, H. L. Van Beek, C. Martinoli, M. W. Fraaije, A. Mattev
Date :  29 Mar 12  (Deposition) - 30 May 12  (Release) - 11 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Baeyer-Villiger, Flavin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Franceschini, H. L. Van Beek, A. Pennetta, C. Martinoli, M. W. Fraaije, A. Mattevi
Exploring The Structural Basis Of Substrate Preferences In Baeyer-Villiger Monooxygenases: Insight From Steroid Monooxygenase.
J. Biol. Chem. V. 287 22626 2012
PubMed-ID: 22605340  |  Reference-DOI: 10.1074/JBC.M112.372177

(-) Compounds

Molecule 1 - STEROID MONOOXYGENASE
    Chains: A
    EC Number: 1.14.13.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-SUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: RHODOCOCCUS RHODOCHROUS
    Organism Taxid: 1829

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
3SO49Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:27 , GLY A:28 , GLY A:30 , ILE A:31 , ALA A:32 , PHE A:50 , GLU A:51 , ALA A:52 , GLY A:58 , VAL A:59 , TRP A:60 , ASN A:63 , TYR A:65 , ARG A:69 , CYS A:70 , ASP A:71 , VAL A:72 , TYR A:77 , THR A:122 , ARG A:123 , VAL A:124 , ALA A:154 , ALA A:155 , GLY A:156 , LEU A:158 , GLN A:205 , LEU A:404 , ALA A:449 , MET A:451 , NAP A:1002 , HOH A:2001 , HOH A:2002 , HOH A:2056 , HOH A:2065 , HOH A:2069 , HOH A:2120 , HOH A:2149BINDING SITE FOR RESIDUE FAD A1001
02AC2SOFTWAREASP A:71 , PRO A:164 , GLY A:198 , THR A:199 , GLY A:200 , SER A:201 , ARG A:222 , SER A:223 , ASN A:225 , ARG A:342 , GLY A:393 , PHE A:394 , TRP A:506 , FAD A:1001 , HOH A:2087 , HOH A:2090 , HOH A:2119 , HOH A:2169BINDING SITE FOR RESIDUE NAP A1002
03AC3SOFTWAREARG A:142BINDING SITE FOR RESIDUE SO4 A1550
04AC4SOFTWAREARG A:423 , VAL A:488BINDING SITE FOR RESIDUE SO4 A1551
05AC5SOFTWARETRP A:89 , HIS A:107 , TYR A:468 , ARG A:472 , HOH A:2170 , HOH A:2171 , HOH A:2172BINDING SITE FOR RESIDUE SO4 A1552
06AC6SOFTWAREASP A:113 , LEU A:114 , ARG A:115 , ARG A:116 , HOH A:2047BINDING SITE FOR RESIDUE SO4 A1553
07AC7SOFTWAREARG A:355 , ASP A:356BINDING SITE FOR RESIDUE SO4 A1554
08AC8SOFTWAREILE A:546 , LEU A:547 , GLU A:548 , GLY A:549BINDING SITE FOR RESIDUE SO4 A1555
09AC9SOFTWAREGLY A:543BINDING SITE FOR RESIDUE SO4 A1556
10BC1SOFTWAREGLU A:242 , GLN A:243 , ASN A:246 , ARG A:250 , HOH A:2103BINDING SITE FOR RESIDUE SO4 A1557
11BC2SOFTWAREHIS A:263 , ARG A:264 , ARG A:285BINDING SITE FOR RESIDUE SO4 A1558

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AOS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4AOS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4AOS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4AOS)

(-) Exons   (0, 0)

(no "Exon" information available for 4AOS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:523
 aligned with O50641_RHORH | O50641 from UniProtKB/TrEMBL  Length:549

    Alignment length:530
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549
         O50641_RHORH    20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVTDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTGAHYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECRNRAEASLLNSANSWYLGANIPGRPRVFMPFLGGFGVYREIITEVAESGYKGFAILEG 549
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh..................hhhhhhhh.......hhhhhhhhhhhhhhhh.hhh.ee....eeeeeee....eeeeee....eeeeeeeee..............hhhhh..eeee.hhh..........eeeee..hhhhhhhhhhhhhhh.eeeeee.....eee......hhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.hhhhhhhh............eee.hhhhhh....eeeee.....eeeee..eeee...eee..eeee.........hhhhheeehhhhhhhhhhh.................eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhh.............-------........hhhhhhhhhhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aos A  20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVTDSGYYETYNRDNVELVDLRSTPIVGMDETGIVTTGAHYDLDMIVLATGFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECRNRAEASLLNSANSWYLG-------RVFMPFLGGFGVYREIITEVAESGYKGFAILEG 549
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   509     517
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4AOS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AOS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AOS)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O50641_RHORH | O50641)
molecular function
    GO:0004499    N,N-dimethylaniline monooxygenase activity    Catalysis of the reaction: N,N-dimethylaniline + NADPH + H+ + O2 = N,N-dimethylaniline N-oxide + NADP+ + H2O.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O50641_RHORH | O50641: 4aox 4ap1 4ap3

(-) Related Entries Specified in the PDB File

4aox OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP
4ap1 OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP
4ap3 OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP