4AG7 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   C. ELEGANS GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE (GNA1): COENZYME A ADDUCT

Authors :   H. C. Dorfmueller, W. Fang, F. V. Rao, D. E. Blair, H. Attrill, S. M. Sheph D. M. F. Van Aalten

Date :   24 Jan 12 (Deposition) - 25 Jul 12 (Release) - 15 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym./Biol. Unit : A,B

Keywords :   Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. C. Dorfmueller, W. Fang, F. V. Rao, D. E. Blair, H. Attrill, D. M. F. Van Aalten
Structural And Biochemical Characterization Of A Trapped Coenzyme A Adduct Of Caenorhabditis Elegans Glucosamine-6- Phosphate N-Acetyltransferase 1.
Acta Crystallogr. , Sect. D V. 68 1019 2012
PubMed-ID: 22868768 | Reference-DOI: 10.1107/S0907444912019592

Molecule 1 - GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE
	Chains	:	A, B
	EC Number	:	2.3.1.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYSS
	Expression System Vector	:	PGEX-6P-1
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	CAENORHABDITIS ELEGANS
	Organism Taxid	:	6239
	Other Details	:	RESIDUE CYS141 FORMS A DISULPHIDE WITH THE COA. CYS158 FROM THE A AND B CHAINS FORM A DISULPHIDE
	Other Details - Source	:	C. ELEGANS COSMID B0024 DNA (SANGER INSTITUTE, CAMBRIDGESHIRE)
	Strain	:	COSMID B0024
	Synonym	:	PHOSPHOGLUCOSAMINE ACETYLASE, PHOSPHOGLUCOSAMINE TRANSACETYLASE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	COA	2	Ligand/Ion	COENZYME A

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:106 , VAL A:107 , VAL A:108 , ARG A:113 , ARG A:114 , GLN A:115 , LYS A:116 , LEU A:117 , GLY A:118 , ALA A:119 , LYS A:123 , CYS A:141 , PRO A:147 , PHE A:148 , HOH A:2158 , HOH A:2160 , HOH A:2162 , HOH A:2201	BINDING SITE FOR RESIDUE COA A1166
2	AC2	SOFTWARE	VAL B:106 , VAL B:107 , VAL B:108 , ARG B:113 , ARG B:114 , GLN B:115 , LYS B:116 , LEU B:117 , GLY B:118 , ALA B:119 , CYS B:141 , LEU B:145 , PRO B:147 , PHE B:148 , GLN B:151 , HOH B:2104 , HOH B:2106 , HOH B:2145 , HOH B:2146 , HOH B:2147 , HOH B:2148 , HOH B:2149 , HOH B:2150	BINDING SITE FOR RESIDUE COA B1166

Asymmetric/Biological Unit

No.	Residues
1	A:158	-	B:158

Asymmetric/Biological Unit

No.	Residues
1	Val A:65	-	Pro A:66
2	Val B:65	-	Pro B:66

(no "SAP(SNP)/Variant" information available for 4AG7)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	GNA1_CAEEL	22-165	2	A:22-165 B:22-165

(no "Exon" information available for 4AG7)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:165
 aligned with GNA1_CAEEL | Q17427 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     
           GNA1_CAEEL     1 MSHIFDASVLAPHIPSNLPDNFKVRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQFGFQDDCNFMTQRF 165
               SCOP domains d4ag7a_ A: automated matches                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh.......eeeee..hhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhh.....eeeeeee.....eeeeeeeeeee.hhhhhheeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhh...ee....eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------GNAT  PDB: A:22-165 UniProt: 22-165                                                                                                              PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ag7 A   1 MSHIFDASVLAPHIPSNLPDNFKVRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQFGFQDDCNFMTQRF 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:164
 aligned with GNA1_CAEEL | Q17427 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:164
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    
           GNA1_CAEEL     2 SHIFDASVLAPHIPSNLPDNFKVRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQFGFQDDCNFMTQRF 165
               SCOP domains d4ag7b_ B: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh.......eeeee..hhhhhhhhhhhhh........hhhhhhhhhhhhhh.....eeeeeee....eeeeeeeeeeee.hhhhhheeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeee..hhhhhhhhh...eee....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------GNAT  PDB: B:22-165 UniProt: 22-165                                                                                                              PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ag7 B   2 SHIFDASVLAPHIPSNLPDNFKVRPLAKDDFSKGYVDLLSQLTSVGNLDQEAFEKRFEAMRTSVPNYHIVVIEDSNSQKVVASASLVVEMKFIHGAGSRGRVEDVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQFGFQDDCNFMTQRF 165
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Nematode (Caenorhabditis elegans) [TaxId: 6239] (2)

1a	d4ag7a_	A:
1b	d4ag7b_	B:

(no "CATH Domain" information available for 4AG7)

(no "Pfam Domain" information available for 4AG7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (GNA1_CAEEL | Q17427)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0004343	glucosamine 6-phosphate N-acetyltransferase activity	Catalysis of the reaction: D-glucosamine 6-phosphate + acetyl-CoA = N-acetyl-D-glucosamine 6-phosphate + CoA + H(+).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Val A:65 - Pro A:66	[ RasMol ]
		Val B:65 - Pro B:66	[ RasMol ]

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	4ag7
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UniProtKB/Swiss-Prot
	GNA1_CAEEL \| Q17427	:	4ag9

4ag9	C. ELEGANS GLUCOSAMINE-6-PHOSPHATE N-ACETYLTRANSFERASE (GNA1): TERNARY COMPLEX WITH COENZYME A AND GLCNAC

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (1, 1)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

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Gene Ontology (5, 5)

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