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(-) Description

Title :  PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH THE SUBSTRATE ANALOGUE APPCP
 
Authors :  S. C. Yong, P. Roversi, J. E. D. Lillington, O. B. Zeldin, E. F. Garman, S. B. C. Berks
Date :  29 Nov 11  (Deposition) - 05 Dec 12  (Release) - 17 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Beta-Propeller (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Yong, P. Roversi, J. Lillington, F. Rodriguez, M. Krehenbrink, O. B. Zeldin, E. F. Garman, S. M. Lea, B. C. Berks
A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry
Science V. 345 1170 2014
PubMed-ID: 25190793  |  Reference-DOI: 10.1126/SCIENCE.1254237

(-) Compounds

Molecule 1 - PHOX
    Atcc: 13525
    Chains: A
    EC Number: 3.1.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE60-PHOX AND PREP4
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: C43 DELTA TAT
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 48-633
    Organism Scientific: PSEUDOMONAS FLUORESCENS
    Organism Taxid: 205922
    Strain: PF0-1
    Synonym: ALKALINE PHOSPHATASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2CA3Ligand/IonCALCIUM ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4FEO1Ligand/IonMU-OXO-DIIRON

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:154 , HIS A:321 , GLY A:322 , GLN A:364 , LEU A:368 , HOH A:2307 , HOH A:2358 , HOH A:2360BINDING SITE FOR RESIDUE EDO A 901
2AC2SOFTWARELYS A:423BINDING SITE FOR RESIDUE EDO A 902
3AC3SOFTWAREGLU A:90 , GLU A:194 , ASN A:195 , ARG A:223 , ASP A:292 , ARG A:294 , ARG A:385 , GLU A:387 , ASP A:479 , ASP A:494 , CA A:1591 , CA A:1592 , CA A:1593 , FEO A:1594 , HOH A:2132 , HOH A:2134 , HOH A:2255 , HOH A:2258 , HOH A:2261 , HOH A:2329 , HOH A:2332 , HOH A:2413 , HOH A:2484 , HOH A:2529BINDING SITE FOR RESIDUE ACP A1000
4AC4SOFTWAREGLU A:273 , GLU A:387 , ASP A:479 , ACP A:1000 , FEO A:1594 , HOH A:2106 , HOH A:2107 , HOH A:2108BINDING SITE FOR RESIDUE CA A1591
5AC5SOFTWAREGLU A:387 , ASP A:479 , ASP A:494 , ACP A:1000 , HOH A:2414BINDING SITE FOR RESIDUE CA A1592
6AC6SOFTWAREASP A:494 , GLU A:532 , ACP A:1000 , HOH A:2130 , HOH A:2134 , HOH A:2484BINDING SITE FOR RESIDUE CA A1593
7AC7SOFTWAREGLU A:90 , CYS A:179 , GLU A:194 , GLU A:273 , ASP A:292 , GLU A:387 , ACP A:1000 , CA A:1591 , HOH A:2106BINDING SITE FOR RESIDUE FEO A1594

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4A9X)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:560 -Pro A:561

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4A9X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4A9X)

(-) Exons   (0, 0)

(no "Exon" information available for 4A9X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:581
 aligned with Q3K5N8_PSEPF | Q3K5N8 from UniProtKB/TrEMBL  Length:633

    Alignment length:581
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            633  
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624        |- 
         Q3K5N8_PSEPF    55 SRLLGFDSIPAATTDTISLPKGYKSSVLISWGQPLHKNGPAFDPSGNGTAAAQEVQFGDNNDGMSLFEFPGEKNRALMAINNEYTNYRYLYPHGGMPQSAEDVRKALACEGVSVIEVQRKNGQWQFVQGSRYNRRIHGNSPLRISGPAAGHELMKTSADKHGKKVLGTFQNCANGKTPWGTYLTCEENFTDCFGSSNAQQQFDPAQKRYGVSAASREINWHPFDPRFDMAKNPNELNRHGWVVEIDPFDPQSTPVKRTALGRFKHENAALAETDDGRAVVYMGDDERGEFIYKFVSRDKINHRNAKANRDILDHGTLYVARFDAGDGNPDHPKGQGQWIELTHGKNGIDASSGFADQAEVLIHARLAASVVGATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPGENGGSTFPEHLPNGKPRSSVMAITREDGGIVGA--   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeeeeee..................hhhhhh......eeeeeeee......eeeeeeee...hhhhhh.......hhhhhhhhhhhheeeeeeeeee..eeee.......eeee...eeeee.....hhhhh........eee....eeeeee.....eeeee.hhhhhh.........hhhhhhhh.............hhhh....hhhhhhhh..eeee.........eee.hhh.......eeee....eeeeeee.......eeeeeeeee....hhhhhhhhhh.eeeeeeee..........eeeeeeee........hhhhh..hhhhhhhhhhhhhhhh.......eeeeee......eeeee.........................eeeeeee.hhh....eeeeeeeee.........hhhhh............eeeeee.....eeeee......hhhhh.....eeeee......eeeeee.....eeeeeee......eeeeee.....................eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a9x A   8 SRLLGFDSIPAATTDTISLPKGYKSSVLISWGQPLHKNGPAFDPSGNGTAAAQEVQFGDNNDGMSLFEFPGEKNRALMAINNEYTNYRYLYPHGGMPQSAEDVRKALACEGVSVIEVQRKNGQWQFVQGSRYNRRIHGNSPLRISGPAAGHELMKTSADKHGKKVLGTFQNCANGKTPWGTYLTCEENFTDCFGSSNAQQQFDPAQKRYGVSAASREINWHPFDPRFDMAKNPNELNRHGWVVEIDPFDPQSTPVKRTALGRFKHENAALAETDDGRAVVYMGDDERGEFIYKFVSRDKINHRNAKANRDILDHGTLYVARFDAGDGNPDHPKGQGQWIELTHGKNGIDASSGFADQAEVLIHARLAASVVGATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPGENGGSTFPEHLPNGKPRSSVMAITREDGGIVGAHH 588
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4A9X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4A9X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4A9X)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q3K5N8_PSEPF | Q3K5N8)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  4a9x
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  3.1.3.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3K5N8_PSEPF | Q3K5N8: 3zwu 4a9v 4alf 4amf

(-) Related Entries Specified in the PDB File

3zwu PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH VANADATE, A TRANSITION STATE ANALOGUE
4a9v PSEUDOMONAS FLUORESCENS PHOX