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(-) Description

Title :  THE STRUCTURE OF A DIMERIC XER RECOMBINASE FROM ARCHAEA
 
Authors :  M. A. Brooks, T. Elarnaout, D. Duranda, J. Lisboa, N. Lazar, B. Raynal, H. Vantilbeurgh, M. Serre, S. Quevillon-Cheruel
Date :  21 Nov 11  (Deposition) - 05 Dec 12  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cell Cycle, Chromosome Dimer Resolution, Pab0255 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Serre, T. El Arnaout, M. A. Brooks, D. Durand, J. Lisboa, N. Lazar B. Raynal, H. Van Tilbeurgh, S. Quevillon-Cheruel
The Carboxy-Terminal Alpha N Helix Of The Archaeal Xera Tyrosine Recombinase Is A Molecular Switch To Control Site-Specific Recombination.
Plos One V. 8E63010 2013
PubMed-ID: 23667562  |  Reference-DOI: 10.1371/JOURNAL.PONE.0063010

(-) Compounds

Molecule 1 - PROBABLE TYROSINE RECOMBINASE XERC-LIKE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYS
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 29292
    Strain: GE5 / ORSAY
    Synonym: XER A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3SO47Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3SO414Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:27 , LYS A:99 , THR A:100 , LYS A:178 , GLU A:271BINDING SITE FOR RESIDUE SO4 A1280
2AC2SOFTWARESER A:26 , ARG A:27 , PHE A:149BINDING SITE FOR RESIDUE SO4 A1281
3AC3SOFTWARETHR A:106 , GLU A:107 , HIS A:235 , GLU A:238BINDING SITE FOR RESIDUE SO4 A1282
4AC4SOFTWARELYS A:25 , SER A:26 , THR A:29BINDING SITE FOR RESIDUE SO4 A1283
5AC5SOFTWARELEU A:120 , ARG A:179BINDING SITE FOR RESIDUE SO4 A1284
6AC6SOFTWARELYS A:96 , ARG A:135 , HIS A:226 , ARG A:229 , HIS A:252BINDING SITE FOR RESIDUE SO4 A1285
7AC7SOFTWAREGLU A:23 , ARG A:135 , VAL A:136 , SER A:137BINDING SITE FOR RESIDUE SO4 A1286
8AC8SOFTWARETHR A:266 , LYS A:270BINDING SITE FOR RESIDUE CL A1287
9AC9SOFTWARELEU A:139 , CYS A:140 , TYR A:190 , LEU A:191 , PHE A:192 , VAL A:193 , LYS A:202 , LEU A:203BINDING SITE FOR RESIDUE EDO A1288

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4A8E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4A8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4A8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4A8E)

(-) Exons   (0, 0)

(no "Exon" information available for 4A8E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with XERA_PYRAB | Q9V1P5 from UniProtKB/Swiss-Prot  Length:286

    Alignment length:271
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278 
           XERA_PYRAB     9 RDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLV 279
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhh....ee....eeee........eeee.hhhhhhhhhhhhhh.........ee......ee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhh.-----......hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a8e A   9 RDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRIIQELLGH-----TQIYTKVSTKHLKEAVKKAKLV 279
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248   |   258       268       278 
                                                                                                                                                                                                                                                                             252   258
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4A8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4A8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4A8E)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (XERA_PYRAB | Q9V1P5)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0015074    DNA integration    The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  4a8e
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